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(v2.1.1.9190) antibiotics deprecation in antibiogram()

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dr. M.S. (Matthijs) Berends
2025-03-09 10:41:11 +01:00
parent c7af397edf
commit a2c2be23c1
26 changed files with 203 additions and 180 deletions
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R/sir_calc.R
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@ -235,7 +235,7 @@ sir_calc_df <- function(type, # "proportion", "count" or "both"
translate_ab <- get_translate_ab(translate_ab)
data.bak <- data
# select only groups and antibiotics
# select only groups and antimicrobials
if (is_null_or_grouped_tbl(data)) {
data_has_groups <- TRUE
groups <- get_group_names(data)