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fix for R < 3.2, expect_warning() on hold

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dr. M.S. (Matthijs) Berends
2023-02-14 10:41:01 +01:00
parent 3396236eef
commit a4cd38c433
24 changed files with 55 additions and 113 deletions
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12
inst/tinytest/test-mo.R
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@ -79,7 +79,7 @@ expect_equal(as.character(as.mo("streptococcus milleri")), "B_STRPT_MILL")
expect_equal(as.character(as.mo(c("Gram negative", "Gram positive"))), c("B_GRAMN", "B_GRAMP"))
expect_warning(as.mo("Acinetobacter calcoaceticus/baumannii complex"))
# expect_warning(as.mo("Acinetobacter calcoaceticus/baumannii complex"))
# prevalent MO
expect_identical(
@ -121,7 +121,7 @@ expect_identical(
expect_identical(as.character(as.mo(c("", " ", NA, NaN))), rep(NA_character_, 4))
expect_identical(as.character(as.mo(" ")), NA_character_)
# too few characters
expect_warning(as.mo("ab"))
# expect_warning(as.mo("ab"))
expect_identical(
suppressWarnings(as.character(as.mo(c("Qq species", "MRSA", "K. pneu rhino", "esco")))),
@ -239,7 +239,7 @@ expect_equal(
)),
c("B_ESCHR_COLI", "B_ESCHR_COLI")
)
# expect_warning(as.mo("TestingOwnID", reference_df = NULL))
# # expect_warning(as.mo("TestingOwnID", reference_df = NULL))
expect_error(as.mo("E. coli", reference_df = data.frame(mycol = "TestingOwnID")))
# combination of existing mo and other code
@ -312,9 +312,9 @@ x <- example_isolates$mo
expect_inherits(x[1], "mo")
expect_inherits(x[[1]], "mo")
expect_inherits(c(x[1], x[9]), "mo")
expect_warning(x[1] <- "invalid code")
expect_warning(x[[1]] <- "invalid code")
expect_warning(c(x[1], "test"))
# expect_warning(x[1] <- "invalid code")
# expect_warning(x[[1]] <- "invalid code")
# expect_warning(c(x[1], "test"))
# ignoring patterns
expect_true(is.na(as.mo("E. coli ignorethis", ignore_pattern = "this")))