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check CMD error
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@ -174,6 +174,7 @@ as.bactid <- function(x) {
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if (toupper(x.backup[i]) %in% c('PISP', 'PRSP', 'VISP', 'VRSP')) {
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if (toupper(x.backup[i]) %in% c('PISP', 'PRSP', 'VISP', 'VRSP')) {
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# peni R, peni I, vanco I, vanco R: S. pneumoniae
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# peni R, peni I, vanco I, vanco R: S. pneumoniae
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x[i] <- 'STCPNE'
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x[i] <- 'STCPNE'
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next
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}
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}
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}
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}
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