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speed improvements

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-07-17 10:32:26 +02:00
parent 715a7630ca
commit a5a4354651
12 changed files with 52 additions and 213 deletions
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14
tests/testthat/test-clipboard.R
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@ -1,13 +1,19 @@
context("clipboard.R")
test_that("clipboard works", {
if (!clipr::clipr_available() & Sys.info()['sysname'] == "Linux") {
# try to support on X11, by setting the R variable DISPLAY
Sys.setenv(DISPLAY = "localhost:10.0")
}
skip_if_not(clipr::clipr_available())
clipboard_export(antibiotics)
expect_identical(antibiotics,
clipboard_import(date_format = "yyyy-mm-dd"))
expect_identical(as.data.frame(antibiotics, stringsAsFactors = FALSE),
clipboard_import())
clipboard_export(septic_patients[1:100,])
expect_identical(tbl_parse_guess(septic_patients[1:100,]),
clipboard_import(guess_col_types = TRUE))
expect_identical(as.data.frame(tbl_parse_guess(septic_patients[1:100,]), stringsAsFactors = FALSE),
clipboard_import(guess_col_types = TRUE, stringsAsFactors = FALSE))
})

6
tests/testthat/test-resistance.R
View File

@ -27,6 +27,12 @@ test_that("resistance works", {
combination_n = n_rsi(cipr, gent)) %>%
pull(combination_n),
c(138, 474, 170, 464, 183))
expect_warning(resistance(as.character(septic_patients$amcl)))
expect_warning(susceptibility(as.character(septic_patients$amcl)))
expect_warning(susceptibility(as.character(septic_patients$amcl,
septic_patients$gent)))
})
test_that("prediction of rsi works", {