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articles/AMR.html
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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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articles/EUCAST.html
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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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articles/MDR.html
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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9031</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9032</small>
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@ -402,19 +402,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 I I I R I R</span></span>
<span><span class="co">#&gt; 2 R I S I S R</span></span>
<span><span class="co">#&gt; 3 I I S S S R</span></span>
<span><span class="co">#&gt; 4 R I I S I R</span></span>
<span><span class="co">#&gt; 5 S R R R S S</span></span>
<span><span class="co">#&gt; 6 R I I R R R</span></span>
<span><span class="co">#&gt; 1 R S R I I R</span></span>
<span><span class="co">#&gt; 2 I S S I R R</span></span>
<span><span class="co">#&gt; 3 S I R S S I</span></span>
<span><span class="co">#&gt; 4 I R R R R R</span></span>
<span><span class="co">#&gt; 5 I R I I S R</span></span>
<span><span class="co">#&gt; 6 R S S S S I</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<span><span class="co">#&gt; 1 R</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -455,40 +455,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3255</td>
<td align="right">65.10%</td>
<td align="right">3255</td>
<td align="right">65.10%</td>
<td align="right">3172</td>
<td align="right">63.44%</td>
<td align="right">3172</td>
<td align="right">63.44%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">938</td>
<td align="right">18.76%</td>
<td align="right">4193</td>
<td align="right">83.86%</td>
<td align="right">997</td>
<td align="right">19.94%</td>
<td align="right">4169</td>
<td align="right">83.38%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">436</td>
<td align="right">8.72%</td>
<td align="right">4629</td>
<td align="right">92.58%</td>
<td align="right">457</td>
<td align="right">9.14%</td>
<td align="right">4626</td>
<td align="right">92.52%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">274</td>
<td align="right">5.48%</td>
<td align="right">4903</td>
<td align="right">98.06%</td>
<td align="right">252</td>
<td align="right">5.04%</td>
<td align="right">4878</td>
<td align="right">97.56%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">97</td>
<td align="right">1.94%</td>
<td align="right">122</td>
<td align="right">2.44%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>

2
articles/PCA.html
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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -38,7 +38,7 @@
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articles/datasets.html
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@ -38,7 +38,7 @@
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articles/index.html
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9031</small>
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articles/other_pkg.html
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@ -38,7 +38,7 @@
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articles/resistance_predict.html
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@ -38,7 +38,7 @@
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articles/welcome_to_AMR.html
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@ -38,7 +38,7 @@
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