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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9030</small>
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@ -178,43 +178,41 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.0625 0.5 4 16 4 0.0625 8 0.002 4 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 0.25 64 64 0.5 &lt;=0.001 0.5 &lt;=0.001 8 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 2 0.01 0.5 0.0625 0.125 &gt;=256 0.025 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.005 0.002 0.025 128 1 0.002 0.0625 0.25 8 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 64 2 0.5 0.0625 128 128 &gt;=256 32 0.01 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 4 0.002 32 8 8 8 &lt;=0.001</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 39 16 46 31 49 28 18 41 45 40 42 49 22 47 40 6 49 25 12 43 43 36 7 16 10</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 35 28 42 31 7 47 45 37 17 44 17 26 25 47 40 22 10 32 36 50 50 24 46 40 10</span>
<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;rsi&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] S I S S R S S I S R R S S S S R S R I R R R R S R</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] R I S R I R R S S S S I S I I R I I I S I I I I R</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 0.002 &lt;=0.001 0.005 0.125 256 4 32 0.01 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] &lt;=0.001 0.25 1 0.025 0.125 32 32 16 0.005 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 0.5 &lt;=0.001 0.0625 0.5 256 2 64 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.01 0.0625 0.25 0.001 8 0.0625 32 8 0.001 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 32 &gt;=64 &gt;=64 8 32 0.0625 0.125 0.5 0.25 0.002 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 1 1 0.5 16 0.0625</span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 32 &lt;=0.25 16 0.5 8 &lt;=0.25 8 16 8 32 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 32 0.5 &lt;=0.25 32 32 32 0.5 4 8 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] &lt;=0.25 32 16 16 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 64 1 8 16 16 16 8 64 16 32 1 64 8 16 2 2 32 32 32 4 32 1 8 2 4 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.25 0.25 &lt;=0.025 &gt;=16 0.0625 0.5 8 0.25 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 4 0.125 1 0.5 0.125 8 &gt;=16 0.0625 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] 0.25 &gt;=16 2 &gt;=16 1 1 4 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.0625 1 4 2 1 0.0625 0.025 0.025 0.125 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 4 0.025 0.25 0.25 0.025 0.25 1 2 0.25 0.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 4 1 1 0.025 4 </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 47 15 40 39 45 10 36 40 47 22 12 11 44 14 45 21 17 49 24 14 11 22 44 45 11</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 24 37 27 23 31 14 9 18 27 42 22 44 41 22 24 22 42 25 49 27 30 30 8 46</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 16 14 13 11 11 14 12 14 15 14 14 16 15 11 14 12 13 17 11 17 13 11 15 11 16</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 12 13 14 12 12 13 14 12 16 13 14 15 11 16 17 12 12 17 11 13 15 11 13 17 16</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 17 25 23 21 19 21 15 15 25 22 22 16 16 18 16 25 23 24 17 23 15 25 22 23 16</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 24 26 22 26 25 20 24 22 26 20 19 20 27 19 15 15 17 15 22 27 18 15 27 16 25</span>
<span class="r-in"><span><span class="co"># }</span></span></span>
</code></pre></div>
</div>