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(v0.6.1.9049) data creation fix

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dr. M.S. (Matthijs) Berends 2019-05-31 21:20:16 +02:00
parent 4bac768557
commit a665612cb8
10 changed files with 14 additions and 11 deletions
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2
DESCRIPTION
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@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 0.6.1.9048 Version: 0.6.1.9049
Date: 2019-05-31 Date: 2019-05-31
Title: Antimicrobial Resistance Analysis Title: Antimicrobial Resistance Analysis
Authors@R: c( Authors@R: c(

3
R/ggplot_rsi.R
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@ -155,7 +155,8 @@
#' translate_ab = FALSE, #' translate_ab = FALSE,
#' nrow = 1, #' nrow = 1,
#' title = "AMR of Top Three Microorganisms In Blood Culture Isolates", #' title = "AMR of Top Three Microorganisms In Blood Culture Isolates",
#' subtitle = expression(paste("Only First Isolates, CoNS grouped according to Becker ", italic("et al."), " (2014)")), #' subtitle = expression(paste("Only First Isolates, CoNS grouped according to Becker ",
#' italic("et al."), " (2014)")),
#' x.title = "Antibiotic (EARS-Net code)") #' x.title = "Antibiotic (EARS-Net code)")
#' } #' }
ggplot_rsi <- function(data, ggplot_rsi <- function(data,

2
docs/LICENSE-text.html
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@ -78,7 +78,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9048</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>

2
docs/articles/index.html
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@ -78,7 +78,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9048</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>

2
docs/authors.html
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@ -78,7 +78,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9048</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>

2
docs/index.html
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@ -42,7 +42,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9048</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>

2
docs/news/index.html
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@ -78,7 +78,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9048</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>

5
docs/reference/ggplot_rsi.html
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@ -80,7 +80,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9047</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>
@ -484,7 +484,8 @@
<span class='kw'>translate_ab</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>translate_ab</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>nrow</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>nrow</span> <span class='kw'>=</span> <span class='fl'>1</span>,
<span class='kw'>title</span> <span class='kw'>=</span> <span class='st'>"AMR of Top Three Microorganisms In Blood Culture Isolates"</span>, <span class='kw'>title</span> <span class='kw'>=</span> <span class='st'>"AMR of Top Three Microorganisms In Blood Culture Isolates"</span>,
<span class='kw'>subtitle</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/expression'>expression</a></span>(<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/paste'>paste</a></span>(<span class='st'>"Only First Isolates, CoNS grouped according to Becker "</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/grDevices/topics/plotmath'>italic</a></span>(<span class='st'>"et al."</span>), <span class='st'>" (2014)"</span>)), <span class='kw'>subtitle</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/expression'>expression</a></span>(<span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/paste'>paste</a></span>(<span class='st'>"Only First Isolates, CoNS grouped according to Becker "</span>,
<span class='fu'><a href='https://www.rdocumentation.org/packages/grDevices/topics/plotmath'>italic</a></span>(<span class='st'>"et al."</span>), <span class='st'>" (2014)"</span>)),
<span class='kw'>x.title</span> <span class='kw'>=</span> <span class='st'>"Antibiotic (EARS-Net code)"</span>) <span class='kw'>x.title</span> <span class='kw'>=</span> <span class='st'>"Antibiotic (EARS-Net code)"</span>)
<span class='co'># }</span></pre> <span class='co'># }</span></pre>
</div> </div>

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docs/reference/index.html
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@ -78,7 +78,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9048</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9049</span>
</span> </span>
</div> </div>

3
man/ggplot_rsi.Rd
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@ -204,7 +204,8 @@ septic_patients \%>\%
translate_ab = FALSE, translate_ab = FALSE,
nrow = 1, nrow = 1,
title = "AMR of Top Three Microorganisms In Blood Culture Isolates", title = "AMR of Top Three Microorganisms In Blood Culture Isolates",
subtitle = expression(paste("Only First Isolates, CoNS grouped according to Becker ", italic("et al."), " (2014)")), subtitle = expression(paste("Only First Isolates, CoNS grouped according to Becker ",
italic("et al."), " (2014)")),
x.title = "Antibiotic (EARS-Net code)") x.title = "Antibiotic (EARS-Net code)")
} }
} }