P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-09 18:09:37 +02:00
Code Releases Activity

(v1.5.0.9039) handle first isolates for missing antibiograms

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-03-08 02:38:32 +01:00
parent 461793dc34
commit a7c9b4c295
21 changed files with 79 additions and 62 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
NEWS.md
View File

@@ -1,5 +1,5 @@
# AMR 1.5.0.9034
## <small>Last updated: 7 March 2021</small>
# AMR 1.5.0.9039
## <small>Last updated: 8 March 2021</small>
### New
* Support for EUCAST Clinical Breakpoints v11.0 (2021), effective in the `eucast_rules()` function and in `as.rsi()` to interpret MIC and disk diffusion values. This is now the default guideline in this package.
@@ -73,6 +73,7 @@
* Support for GISA (glycopeptide-intermediate *S. aureus*), so e.g. `mo_genus("GISA")` will return `"Staphylococcus"`
* Added translations of German and Spanish for more than 200 antimicrobial drugs
* Speed improvement for `as.ab()` when the input is an official name or ATC code
* Added argument `include_untested_rsi` to the `first_isolate()` functions (defaults to `TRUE` to keep existing behaviour), to be able to exclude rows where all R/SI values (class `<rsi>`, see `as.rsi()`) are empty
### Other
* Big documentation updates