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(v1.5.0.9039) handle first isolates for missing antibiograms

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dr. M.S. (Matthijs) Berends
2021-03-08 02:38:32 +01:00
parent 461793dc34
commit a7c9b4c295
21 changed files with 79 additions and 62 deletions
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13
docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9034</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9039</span>
</span>
</div>
@ -236,13 +236,13 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1509034" class="section level1">
<h1 class="page-header" data-toc-text="1.5.0.9034">
<a href="#amr-1509034" class="anchor"></a>AMR 1.5.0.9034<small> Unreleased </small>
<div id="amr-1509039" class="section level1">
<h1 class="page-header" data-toc-text="1.5.0.9039">
<a href="#amr-1509039" class="anchor"></a>AMR 1.5.0.9039<small> Unreleased </small>
</h1>
<div id="last-updated-7-march-2021" class="section level2">
<div id="last-updated-8-march-2021" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-7-march-2021" class="anchor"></a><small>Last updated: 7 March 2021</small>
<a href="#last-updated-8-march-2021" class="anchor"></a><small>Last updated: 8 March 2021</small>
</h2>
<div id="new" class="section level3">
<h3 class="hasAnchor">
@ -351,6 +351,7 @@
</li>
<li>Added translations of German and Spanish for more than 200 antimicrobial drugs</li>
<li>Speed improvement for <code><a href="../reference/as.ab.html">as.ab()</a></code> when the input is an official name or ATC code</li>
<li>Added argument <code>include_untested_rsi</code> to the <code><a href="../reference/first_isolate.html">first_isolate()</a></code> functions (defaults to <code>TRUE</code> to keep existing behaviour), to be able to exclude rows where all R/SI values (class <code>&lt;rsi&gt;</code>, see <code><a href="../reference/as.rsi.html">as.rsi()</a></code>) are empty</li>
</ul>
</div>
<div id="other" class="section level3">