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@ -183,42 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.25 64 4 8 0.125 16 0.125 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 64 2 2 1 0.005 0.0625 2 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 0.025 256 8 2 128 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 64 0.25 0.002 128 128 2 1 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 4 4 2 0.025 64 8 32 0.25 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 16 32 0.0625 1 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 39 21 49 46 49 48 32 49 18 43 8 14 50 31 38 18 36 47 42 50 18 47 50 17 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 40 9 45 33 41 31 50 48 24 13 27 29 26 50 46 48 43 7 34 48 40 45 18 24</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R S R R I R I R I I R I S R S R S S S I I I R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I S S S S S S I R R I S R S I R R I R R S S S R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.001 0.025 32 4 8 0.002 1 0.002 0.002 1 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 0.025 >=128 4 8 0.002 0.001 0.5 0.01 >=128 0.001 >=128</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.002 0.25 0.001 0.025 0.125 32 8 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.01 32 0.01 0.005 0.005 32 4 32 8 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 4 0.5 0.001 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 <=1 2 4 4 4 <=1 8 8 8 <=1 <=1 4 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 <=1 2 4 4 <=1 8 >=16 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 8 16 <=1 2 2 4 4 4 8 <=1 <=1 <=1 <=1 8 2 16 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 32 16 8 2 16 <=1</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 1 0.25 0.5 0.125 4 0.025 4 0.025 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 0.25 4 >=8 0.5 0.125 0.025 0.025 0.5 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 0.125 2 0.0625 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.125 1 1 0.125 0.25 0.25 >=4 2 2 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 0.125 1 0.25 >=4 0.125 >=4 0.5 >=4 0.25 0.25 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 39 45 17 46 43 35 44 42 26 40 9 14 49 40 46 48 8 43 31 47 47 39 40 13 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 32 35 46 12 40 42 20 46 25 31 40 31 40 40 42 29 49 26 19 42 13 43 23 47</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 16 17 12 13 12 11 16 11 13 17 15 14 17 14 13 16 16 11 12 13 14 14 14 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 15 12 12 11 15 16 17 12 12 16 15 16 15 11 13 12 17 14 14 17 12 15 12 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 26 18 15 21 26 23 22 16 22 27 25 15 24 16 23 20 19 18 23 24 15 27 18 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 25 20 18 15 20 19 21 22 15 15 18 20 25 16 25 24 23 26 21 25 21 25 22 16</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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