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(v2.1.1.9281) speed improvement is_sir_eligible

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dr. M.S. (Matthijs) Berends
2025-05-20 11:31:42 +02:00
parent 26447fe29b
commit a94452b9be
3 changed files with 5 additions and 5 deletions
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4
R/sir.R
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@ -445,9 +445,9 @@ is_sir_eligible <- function(x, threshold = 0.05) {
%in% class(x))) {
# no transformation needed
return(FALSE)
} else if (!all(is.na(x)) && all(toupper(x) %in% c("S", "SDD", "I", "R", "NI", NA))) {
} else if (!all(is.na(x)) && all(x %in% c("S", "SDD", "I", "R", "NI", NA, "s", "sdd", "i", "r", "ni"))) {
return(TRUE)
} else if (!all(is.na(x)) && !any(c("S", "SDD", "I", "R", "NI") %in% gsub("([SIR])\\1+", "\\1", gsub("[^A-Z]", "", toupper(x), perl = TRUE), perl = TRUE), na.rm = TRUE)) {
} else if (!all(is.na(x)) && !any(c("S", "SDD", "I", "R", "NI") %in% gsub("([SIR])\\1+", "\\1", gsub("[^A-Z]", "", toupper(unique(x[1:10000])), perl = TRUE), perl = TRUE), na.rm = TRUE)) {
return(FALSE)
} else {
x <- x[!is.na(x) & !is.null(x) & !x %in% c("", "-", "NULL")]