P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-27 14:27:53 +02:00
Code Releases Activity

cli-147-2111

Browse Source
This commit is contained in:
github-actions
2024-06-13 05:43:57 +00:00
parent 79ff526e9c
commit a96b1c7684
77 changed files with 124 additions and 126 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
index.html
View File

@ -39,7 +39,7 @@
<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9046</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9047</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -200,13 +200,11 @@
<li>Provides the <strong>full microbiological taxonomy</strong> and extensive info on <strong>all antimicrobial drugs</strong>
</li>
<li>Applies all recent <strong>CLSI</strong> and <strong>EUCAST</strong> clinical and veterinary breakpoints for MICs and disk zones</li>
<li>Corrects for duplicate isolates using 4 methods, <strong>calculates</strong> and <strong>predicts</strong> AMR per antibiotic class</li>
<li>Corrects for duplicate isolates, <strong>calculates</strong> and <strong>predicts</strong> AMR per antibiotic class</li>
<li>Integrates with <strong>WHONET</strong>, ATC, <strong>EARS-Net</strong>, PubChem, <strong>LOINC</strong>, <strong>SNOMED CT</strong>, and <strong>NCBI</strong>
</li>
<li>100% free of costs and dependencies, highly suitable for places with <strong>limited resources</strong>
</li>
<li>
<strong>Easy to use</strong> and <strong>easy to learn</strong>, with a <strong>community</strong> of contributors from around the globe</li>
</ul>
<div style="display: flex; font-size: 0.8em;">
<p style="text-align:left; width: 50%;">
@ -773,7 +771,7 @@
<div class="section level4">
<h4 id="latest-development-version">Latest development version<a class="anchor" aria-label="anchor" href="#latest-development-version"></a>
</h4>
<p><a href="https://codecov.io/gh/msberends/AMR?branch=main" class="external-link"><img src="https://github.com/msberends/AMR/workflows/check-old/badge.svg?branch=main" alt="check-recent"></a> <a href="https://codecov.io/gh/msberends/AMR?branch=main" class="external-link"><img src="https://github.com/msberends/AMR/workflows/check-recent/badge.svg?branch=main" alt="check-recent"></a> <a href="https://www.codefactor.io/repository/github/msberends/amr" class="external-link"><img src="https://www.codefactor.io/repository/github/msberends/amr/badge" alt="CodeFactor"></a> <a href="https://codecov.io/gh/msberends/AMR?branch=main" class="external-link"><img src="https://codecov.io/gh/msberends/AMR/branch/main/graph/badge.svg" alt="Codecov"></a></p>
<p><a href="https://github.com/msberends/AMR/actions/workflows/check-old.yaml?query=branch%3Amain" class="external-link"><img src="https://github.com/msberends/AMR/actions/workflows/check-old.yaml/badge.svg?branch=main" alt="check-old"></a> <a href="https://github.com/msberends/AMR/actions/workflows/check-recent.yaml?query=branch%3Amain" class="external-link"><img src="https://github.com/msberends/AMR/actions/workflows/check-recent.yaml/badge.svg?branch=main" alt="check-recent"></a> <a href="https://www.codefactor.io/repository/github/msberends/amr" class="external-link"><img src="https://www.codefactor.io/repository/github/msberends/amr/badge" alt="CodeFactor"></a> <a href="https://codecov.io/gh/msberends/AMR?branch=main" class="external-link"><img src="https://codecov.io/gh/msberends/AMR/branch/main/graph/badge.svg" alt="Codecov"></a></p>
<p>Please read our <a href="https://github.com/msberends/AMR/wiki/Developer-Guideline" class="external-link">Developer Guideline here</a>.</p>
<p>The latest and unpublished development version can be installed from GitHub in two ways:</p>
<ol style="list-style-type: decimal">