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(v1.6.0.9013) website update

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dr. M.S. (Matthijs) Berends
2021-04-29 17:16:30 +02:00
parent 5e06b20d43
commit a9fd4aa49f
41 changed files with 931 additions and 842 deletions
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5
man/key_antimicrobials.Rd
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@ -29,7 +29,6 @@ antimicrobials_equal(
type = c("points", "keyantimicrobials"),
ignore_I = TRUE,
points_threshold = 2,
info = FALSE,
...
)
}
@ -48,7 +47,7 @@ antimicrobials_equal(
\item{only_rsi_columns}{a logical to indicate whether only columns must be included that were transformed to class \verb{<rsi>} (see \code{\link[=as.rsi]{as.rsi()}}) on beforehand (defaults to \code{FALSE})}
\item{...}{ignored, allows for future extensions}
\item{...}{ignored, only in place to allow future extensions}
\item{y, z}{character vectors to compare}
@ -57,8 +56,6 @@ antimicrobials_equal(
\item{ignore_I}{logical to indicate whether antibiotic interpretations with \code{"I"} will be ignored when \code{type = "keyantimicrobials"}, see \emph{Details}}
\item{points_threshold}{minimum number of points to require before differences in the antibiogram will lead to inclusion of an isolate when \code{type = "points"}, see \emph{Details}}
\item{info}{unused - previously used to indicate whether a progress bar should print}
}
\description{
These functions can be used to determine first weighted isolates by considering the phenotype for isolate selection (see \code{\link[=first_isolate]{first_isolate()}}). Using a phenotype-based method to determine first isolates is more reliable than methods that disregard phenotypes.