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add confidence intervals (fixed #70), remove combine_IR

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-10-20 16:08:01 +02:00
parent 85e2fbe4a3
commit aa2c0639d0
19 changed files with 248 additions and 144 deletions
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7
inst/tinytest/test-count.R
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@ -94,13 +94,6 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0")) {
example_isolates$AMX %>% count_resistant()
)
)
expect_equal(
example_isolates %>% select(AMX) %>% count_df(combine_IR = TRUE) %>% pull(value),
c(
suppressWarnings(example_isolates$AMX %>% count_S()),
suppressWarnings(example_isolates$AMX %>% count_IR())
)
)
expect_equal(
example_isolates %>% select(AMX) %>% count_df(combine_SI = FALSE) %>% pull(value),
c(