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2026-03-07 17:15:05 +00:00
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reference/as.sir.md
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@@ -660,10 +660,10 @@ sir_interpretation_history()
#> # A tibble: 4 × 18
#> datetime index method ab_given mo_given host_given input_given
#> <dttm> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 2026-03-06 11:51:54 1 MIC amoxicillin Escherich… human 8
#> 2 2026-03-06 11:51:54 1 MIC cipro Escherich… human 0.256
#> 3 2026-03-06 11:51:55 1 DISK tobra Escherich… human 16
#> 4 2026-03-06 11:51:55 1 DISK genta Escherich… human 18
#> 1 2026-03-07 17:11:21 1 MIC amoxicillin Escherich… human 8
#> 2 2026-03-07 17:11:21 1 MIC cipro Escherich… human 0.256
#> 3 2026-03-07 17:11:22 1 DISK tobra Escherich… human 16
#> 4 2026-03-07 17:11:22 1 DISK genta Escherich… human 18
#> # ℹ 11 more variables: ab <ab>, mo <mo>, host <chr>, input <chr>,
#> # outcome <sir>, notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,
#> # breakpoint_S_R <chr>, site <chr>
@@ -870,10 +870,8 @@ as.sir(c("S", "SDD", "I", "R", "NI", "A", "B", "C"))
#> Class 'sir'
#> [1] S SDD I R NI <NA> <NA> <NA>
as.sir("<= 0.002; S") # will return "S"
#> Warning: in `as.sir()`: 1 result truncated (100%) that were invalid antimicrobial
#> interpretations: "<= 0.002; S"
#> Class 'sir'
#> [1] <NA>
#> [1] S
as.sir(c(1, 2, 3))
#> ℹ in `as.sir()`: Interpreting input value 1 as "S", 2 as "I", and 3 as "R"