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(v1.3.0.9036) documentation fix

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dr. M.S. (Matthijs) Berends
2020-09-30 10:24:53 +02:00
parent 4e0374af29
commit ac1c78c793
19 changed files with 86 additions and 106 deletions
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9
R/rsi.R
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@ -95,6 +95,11 @@
#' @examples
#' summary(example_isolates) # see all R/SI results at a glance
#'
#' if (require("skimr")) {
#' # support for skim() too:
#' skim(example_isolates)
#' }
#'
#' # For INTERPRETING disk diffusion and MIC values -----------------------
#'
#' # a whole data set, even with combined MIC values and disk zones
@ -124,7 +129,7 @@
#' df %>% mutate_if(function(x) is.mic(x) | is.disk(x), as.rsi)
#' df %>% mutate(across(where(is.mic), as.rsi))
#' df %>% mutate_at(vars(AMP:TOB), as.rsi)
#' df %>% mutate(across(AMP:TOB), as.rsi)
#' df %>% mutate(across(AMP:TOB, as.rsi))
#'
#' df %>%
#' mutate_at(vars(AMP:TOB), as.rsi, mo = "E. coli")
@ -168,7 +173,7 @@
#'
#' # note: from dplyr 1.0.0 on, this will be:
#' # example_isolates %>%
#' # mutate(across(is.rsi.eligible, as.rsi))
#' # mutate(across(where(is.rsi.eligible), as.rsi))
#' }
#' }
as.rsi <- function(x, ...) {