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(v1.3.0.9036) documentation fix

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dr. M.S. (Matthijs) Berends
2020-09-30 10:24:53 +02:00
parent 4e0374af29
commit ac1c78c793
19 changed files with 86 additions and 106 deletions
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9
man/as.rsi.Rd
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@ -156,6 +156,11 @@ On our website \url{https://msberends.github.io/AMR} you can find \href{https://
\examples{
summary(example_isolates) # see all R/SI results at a glance
if (require("skimr")) {
# support for skim() too:
skim(example_isolates)
}
# For INTERPRETING disk diffusion and MIC values -----------------------
# a whole data set, even with combined MIC values and disk zones
@ -185,7 +190,7 @@ if (require("dplyr")) {
df \%>\% mutate_if(function(x) is.mic(x) | is.disk(x), as.rsi)
df \%>\% mutate(across(where(is.mic), as.rsi))
df \%>\% mutate_at(vars(AMP:TOB), as.rsi)
df \%>\% mutate(across(AMP:TOB), as.rsi)
df \%>\% mutate(across(AMP:TOB, as.rsi))
df \%>\%
mutate_at(vars(AMP:TOB), as.rsi, mo = "E. coli")
@ -228,7 +233,7 @@ if (require("dplyr")) {
# note: from dplyr 1.0.0 on, this will be:
# example_isolates \%>\%
# mutate(across(is.rsi.eligible, as.rsi))
# mutate(across(where(is.rsi.eligible), as.rsi))
}
}
}