mirror of
https://github.com/msberends/AMR.git
synced 2025-07-10 21:01:57 +02:00
new species groups, updated clinical breakpoints
This commit is contained in:
@ -321,3 +321,44 @@ This data set contains randomised fictitious data, but reflects reality and can
|
||||
example_isolates_unclean %>%
|
||||
print_df()
|
||||
```
|
||||
|
||||
|
||||
## `microorganisms.groups`: Species Groups and Microbiological Complexes
|
||||
|
||||
`r structure_txt(microorganisms.groups)`
|
||||
|
||||
This data set is in R available as `microorganisms.groups`, after you load the `AMR` package.
|
||||
|
||||
`r download_txt("microorganisms.groups")`
|
||||
|
||||
### Source
|
||||
|
||||
This data set contains species groups and microbiological complexes, which are used in the `clinical_breakpoints` data set.
|
||||
|
||||
### Example content
|
||||
|
||||
```{r, echo = FALSE}
|
||||
microorganisms.groups %>%
|
||||
print_df()
|
||||
```
|
||||
|
||||
|
||||
## `microorganisms.codes`: Common Laboratory Codes
|
||||
|
||||
`r structure_txt(microorganisms.codes)`
|
||||
|
||||
This data set is in R available as `microorganisms.codes`, after you load the `AMR` package.
|
||||
|
||||
`r download_txt("microorganisms.codes")`
|
||||
|
||||
### Source
|
||||
|
||||
This data set contains commonly used codes for microorganisms, from laboratory systems and [WHONET](https://whonet.org).
|
||||
|
||||
### Example content
|
||||
|
||||
```{r, echo = FALSE}
|
||||
microorganisms.codes %>%
|
||||
print_df()
|
||||
```
|
||||
|
||||
|
Reference in New Issue
Block a user