P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-08 10:31:53 +02:00
Code Releases Activity

(v1.4.0.9046) get_episode

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-12-27 00:07:00 +01:00
parent 291f802be3
commit acbd0cf7ca
99 changed files with 1143 additions and 683 deletions
Download Patch File Download Diff File Expand all files Collapse all files

58
R/mo.R
View File

@ -361,11 +361,11 @@ exec_as.mo <- function(x,
# keep track of time - give some hints to improve speed if it takes a long time
start_time <- Sys.time()
mo_env$mo_failures <- NULL
mo_env$mo_uncertainties <- NULL
mo_env$mo_renamed <- NULL
pkg_env$mo_failures <- NULL
pkg_env$mo_uncertainties <- NULL
pkg_env$mo_renamed <- NULL
}
mo_env$mo_renamed_last_run <- NULL
pkg_env$mo_renamed_last_run <- NULL
failures <- character(0)
uncertainty_level <- translate_allow_uncertain(allow_uncertain)
@ -598,7 +598,7 @@ exec_as.mo <- function(x,
} else {
x[i] <- lookup(fullname == found["fullname_new"], haystack = MO_lookup)
}
mo_env$mo_renamed_last_run <- found["fullname"]
pkg_env$mo_renamed_last_run <- found["fullname"]
was_renamed(name_old = found["fullname"],
name_new = lookup(fullname == found["fullname_new"], "fullname", haystack = MO_lookup),
ref_old = found["ref"],
@ -973,7 +973,7 @@ exec_as.mo <- function(x,
} else {
x[i] <- lookup(fullname == found["fullname_new"], haystack = MO_lookup)
}
mo_env$mo_renamed_last_run <- found["fullname"]
pkg_env$mo_renamed_last_run <- found["fullname"]
was_renamed(name_old = found["fullname"],
name_new = lookup(fullname == found["fullname_new"], "fullname", haystack = MO_lookup),
ref_old = found["ref"],
@ -1025,7 +1025,7 @@ exec_as.mo <- function(x,
ref_old = found["ref"],
ref_new = lookup(fullname == found["fullname_new"], "ref", haystack = MO_lookup),
mo = lookup(fullname == found["fullname_new"], "mo", haystack = MO_lookup))
mo_env$mo_renamed_last_run <- found["fullname"]
pkg_env$mo_renamed_last_run <- found["fullname"]
uncertainties <<- rbind(uncertainties,
format_uncertainty_as_df(uncertainty_level = now_checks_for_uncertainty_level,
input = a.x_backup,
@ -1396,7 +1396,7 @@ exec_as.mo <- function(x,
# handling failures ----
failures <- failures[!failures %in% c(NA, NULL, NaN)]
if (length(failures) > 0 & initial_search == TRUE) {
mo_env$mo_failures <- sort(unique(failures))
pkg_env$mo_failures <- sort(unique(failures))
plural <- c("value", "it", "was")
if (pm_n_distinct(failures) > 1) {
plural <- c("values", "them", "were")
@ -1423,7 +1423,7 @@ exec_as.mo <- function(x,
# handling uncertainties ----
if (NROW(uncertainties) > 0 & initial_search == TRUE) {
uncertainties <- as.list(pm_distinct(uncertainties, input, .keep_all = TRUE))
mo_env$mo_uncertainties <- uncertainties
pkg_env$mo_uncertainties <- uncertainties
plural <- c("", "it", "was")
if (length(uncertainties$input) > 1) {
@ -1559,13 +1559,13 @@ was_renamed <- function(name_old, name_new, ref_old = "", ref_new = "", mo = "")
new_ref = ref_new,
mo = mo,
stringsAsFactors = FALSE)
already_set <- mo_env$mo_renamed
already_set <- pkg_env$mo_renamed
if (!is.null(already_set)) {
mo_env$mo_renamed = rbind(already_set,
pkg_env$mo_renamed = rbind(already_set,
newly_set,
stringsAsFactors = FALSE)
} else {
mo_env$mo_renamed <- newly_set
pkg_env$mo_renamed <- newly_set
}
}
@ -1573,9 +1573,9 @@ format_uncertainty_as_df <- function(uncertainty_level,
input,
result_mo,
candidates = NULL) {
if (!is.null(mo_env$mo_renamed_last_run)) {
fullname <- mo_env$mo_renamed_last_run
mo_env$mo_renamed_last_run <- NULL
if (!is.null(pkg_env$mo_renamed_last_run)) {
fullname <- pkg_env$mo_renamed_last_run
pkg_env$mo_renamed_last_run <- NULL
renamed_to <- MO_lookup[match(result_mo, MO_lookup$mo), "fullname", drop = TRUE][1]
} else {
fullname <- MO_lookup[match(result_mo, MO_lookup$mo), "fullname", drop = TRUE][1]
@ -1764,16 +1764,16 @@ unique.mo <- function(x, incomparables = FALSE, ...) {
#' @rdname as.mo
#' @export
mo_failures <- function() {
mo_env$mo_failures
pkg_env$mo_failures
}
#' @rdname as.mo
#' @export
mo_uncertainties <- function() {
if (is.null(mo_env$mo_uncertainties)) {
if (is.null(pkg_env$mo_uncertainties)) {
return(NULL)
}
set_clean_class(as.data.frame(mo_env$mo_uncertainties,
set_clean_class(as.data.frame(pkg_env$mo_uncertainties,
stringsAsFactors = FALSE),
new_class = c("mo_uncertainties", "data.frame"))
}
@ -1842,7 +1842,7 @@ print.mo_uncertainties <- function(x, ...) {
#' @rdname as.mo
#' @export
mo_renamed <- function() {
items <- mo_env$mo_renamed
items <- pkg_env$mo_renamed
if (is.null(items)) {
items <- data.frame(stringsAsFactors = FALSE)
} else {
@ -1906,20 +1906,20 @@ translate_allow_uncertain <- function(allow_uncertain) {
}
get_mo_failures_uncertainties_renamed <- function() {
remember <- list(failures = mo_env$mo_failures,
uncertainties = mo_env$mo_uncertainties,
renamed = mo_env$mo_renamed)
remember <- list(failures = pkg_env$mo_failures,
uncertainties = pkg_env$mo_uncertainties,
renamed = pkg_env$mo_renamed)
# empty them, otherwise mo_shortname("Chlamydophila psittaci") will give 3 notes
mo_env$mo_failures <- NULL
mo_env$mo_uncertainties <- NULL
mo_env$mo_renamed <- NULL
pkg_env$mo_failures <- NULL
pkg_env$mo_uncertainties <- NULL
pkg_env$mo_renamed <- NULL
remember
}
load_mo_failures_uncertainties_renamed <- function(metadata) {
mo_env$mo_failures <- metadata$failures
mo_env$mo_uncertainties <- metadata$uncertainties
mo_env$mo_renamed <- metadata$renamed
pkg_env$mo_failures <- metadata$failures
pkg_env$mo_uncertainties <- metadata$uncertainties
pkg_env$mo_renamed <- metadata$renamed
}
trimws2 <- function(x) {
@ -2007,4 +2007,4 @@ repair_reference_df <- function(reference_df) {
reference_df
}
mo_env <- new.env(hash = FALSE)
pkg_env <- new.env(hash = FALSE)