Built site for AMR@3.0.1.9023: 4e3ea95

news/index.html

@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9022</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9023</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -49,9 +49,9 @@
     </div>
 
     <div class="section level2">
-<h2 class="pkg-version" data-toc-text="3.0.1.9022" id="amr-3019022">AMR 3.0.1.9022<a class="anchor" aria-label="anchor" href="#amr-3019022"></a></h2>
+<h2 class="pkg-version" data-toc-text="3.0.1.9023" id="amr-3019023">AMR 3.0.1.9023<a class="anchor" aria-label="anchor" href="#amr-3019023"></a></h2>
 <div class="section level4">
-<h4 id="new-3-0-1-9022">New<a class="anchor" aria-label="anchor" href="#new-3-0-1-9022"></a></h4>
+<h4 id="new-3-0-1-9023">New<a class="anchor" aria-label="anchor" href="#new-3-0-1-9023"></a></h4>
 <ul><li>Integration with the <strong>tidymodels</strong> framework to allow seamless use of SIR, MIC and disk data in modelling pipelines via <code>recipes</code>
 <ul><li>
 <code><a href="../reference/amr-tidymodels.html">step_mic_log2()</a></code> to transform <code>&lt;mic&gt;</code> columns with log2, and <code><a href="../reference/amr-tidymodels.html">step_sir_numeric()</a></code> to convert <code>&lt;sir&gt;</code> columns to numeric</li>
@@ -84,8 +84,9 @@
 </ul></li>
 </ul></div>
 <div class="section level4">
-<h4 id="fixes-3-0-1-9022">Fixes<a class="anchor" aria-label="anchor" href="#fixes-3-0-1-9022"></a></h4>
-<ul><li>Fixed a bug in <code><a href="../reference/antibiogram.html">antibiogram()</a></code> for when no antimicrobials are set</li>
+<h4 id="fixes-3-0-1-9023">Fixes<a class="anchor" aria-label="anchor" href="#fixes-3-0-1-9023"></a></h4>
+<ul><li>Fixed a bug in <code><a href="../reference/as.ab.html">as.ab()</a></code> where certain AB codes containing “PH” or “TH” (such as <code>ETH</code>, <code>MTH</code>, <code>PHE</code>, <code>PHN</code>, <code>STH</code>, <code>THA</code>, <code>THI1</code>) would incorrectly return <code>NA</code> when combined in a vector with any untranslatable value (<a href="https://github.com/msberends/AMR/issues/245" class="external-link">#245</a>)</li>
+<li>Fixed a bug in <code><a href="../reference/antibiogram.html">antibiogram()</a></code> for when no antimicrobials are set</li>
 <li>Fixed a bug in <code><a href="../reference/as.sir.html">as.sir()</a></code> where for numeric input the arguments <code>S</code>, <code>I</code>, and <code>R</code> would not be considered (<a href="https://github.com/msberends/AMR/issues/244" class="external-link">#244</a>)</li>
 <li>Fixed some foreign translations of antimicrobial drugs</li>
 <li>Fixed a bug for printing column names to the console when using <code>mutate_at(vars(...), as.mic)</code> (<a href="https://github.com/msberends/AMR/issues/249" class="external-link">#249</a>)</li>
@@ -93,7 +94,7 @@
 <li>Fixed Italian translation of CoNS to Stafilococco coagulasi-negativo and CoPS to Stafilococco coagulasi-positivo (<a href="https://github.com/msberends/AMR/issues/256" class="external-link">#256</a>)</li>
 </ul></div>
 <div class="section level4">
-<h4 id="updates-3-0-1-9022">Updates<a class="anchor" aria-label="anchor" href="#updates-3-0-1-9022"></a></h4>
+<h4 id="updates-3-0-1-9023">Updates<a class="anchor" aria-label="anchor" href="#updates-3-0-1-9023"></a></h4>
 <ul><li>
 <code><a href="../reference/proportion.html">susceptibility()</a></code> and <code><a href="../reference/proportion.html">resistance()</a></code> gained the argument <code>guideline</code>, which defaults to EUCAST, for interpreting the ‘I’ category correctly.</li>
 <li>

news/index.md

@@ -1,6 +1,6 @@
 # Changelog
 
-## AMR 3.0.1.9022
+## AMR 3.0.1.9023
 
 #### New
 
@@ -45,6 +45,11 @@
 
 #### Fixes
 
+- Fixed a bug in [`as.ab()`](https://amr-for-r.org/reference/as.ab.md)
+  where certain AB codes containing “PH” or “TH” (such as `ETH`, `MTH`,
+  `PHE`, `PHN`, `STH`, `THA`, `THI1`) would incorrectly return `NA` when
+  combined in a vector with any untranslatable value
+  ([\#245](https://github.com/msberends/AMR/issues/245))
 - Fixed a bug in
   [`antibiogram()`](https://amr-for-r.org/reference/antibiogram.md) for
   when no antimicrobials are set