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(v1.4.0.9004) bugfix

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dr. M.S. (Matthijs) Berends
2020-10-21 11:50:43 +02:00
parent 2ef7dfc8a3
commit ade9f8bafd
15 changed files with 32 additions and 32 deletions
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6
man/as.rsi.Rd
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@ -157,14 +157,14 @@ On our website \url{https://msberends.github.io/AMR/} you can find \href{https:/
summary(example_isolates) # see all R/SI results at a glance
if (require("skimr")) {
# support for skim() too:
# class <rsi> supported in skim() too:
skim(example_isolates)
}
# For INTERPRETING disk diffusion and MIC values -----------------------
# a whole data set, even with combined MIC values and disk zones
df <- data.frame(microorganism = "E. coli",
df <- data.frame(microorganism = "Escherichia coli",
AMP = as.mic(8),
CIP = as.mic(0.256),
GEN = as.disk(18),
@ -193,7 +193,7 @@ if (require("dplyr")) {
df \%>\% mutate(across(AMP:TOB, as.rsi))
df \%>\%
mutate_at(vars(AMP:TOB), as.rsi, mo = "E. coli")
mutate_at(vars(AMP:TOB), as.rsi, mo = .$microorganism)
# to include information about urinary tract infections (UTI)
data.frame(mo = "E. coli",