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super big huge update

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-09-16 23:15:23 +02:00
parent 63fe160322
commit ae9059ab99
111 changed files with 2269 additions and 89912 deletions
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2
.github/workflows/check.yaml vendored
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@ -156,4 +156,4 @@ jobs:
uses: actions/upload-artifact@v2
with:
name: artifacts-${{ matrix.config.os }}-r${{ matrix.config.r }}
path: /home/runner/work/AMR.Rcheck
path: /home/runner/work/AMR/AMR.Rcheck

13
.github/workflows/lintr.yaml vendored
View File

@ -52,5 +52,16 @@ jobs:
extra-packages: any::lintr
- name: Lint
run: lintr::lint_package(linters = lintr::with_defaults(line_length_linter = NULL, trailing_whitespace_linter = NULL, object_name_linter = NULL, cyclocomp_linter = NULL, object_length_linter = lintr::object_length_linter(length = 50L)), exclusions = list("R/aa_helper_pm_functions.R"))
run: |
# old: lintr::lint_package(linters = lintr::with_defaults(line_length_linter = NULL, trailing_whitespace_linter = NULL, object_name_linter = NULL, cyclocomp_linter = NULL, object_length_linter = lintr::object_length_linter(length = 50L)), exclusions = list("R/aa_helper_pm_functions.R"))
# now get ALL linters, not just default ones
linters <- ls(envir = asNamespace("lintr"), pattern = "_linter$")
# lose deprecated
linters <- linters[!grepl("^(closed_curly|open_curly|paren_brace|semicolon_terminator)_linter$", linters)]
# and the ones we find unnnecessary
linters <- linters[!grepl("^(extraction_operator|implicit_integer|line_length|object_name|nonportable_path)_linter$", linters)]
# put the functions in a list
linters <- lapply(linters, function(l) eval(parse(text = paste0("lintr::", l, "()")), envir = asNamespace("lintr")))
# run them all!
lintr::lint_package(linters = linters, exclusions = list("R/aa_helper_pm_functions.R"))
shell: Rscript {0}