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(v3.0.1.9091) unit test

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dr. M.S. (Matthijs) Berends
2026-09-08 15:02:07 +02:00
parent 3f50d6b6c3
commit aebad2ae47
5 changed files with 6 additions and 6 deletions
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R/interpretive_rules.R
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@@ -80,7 +80,7 @@ format_eucast_version_nr <- function(version, markdown = TRUE) {
#' **Note:** This function does not translate MIC or disk values to SIR values. Use [as.sir()] for that. \cr
#' **Note:** When ampicillin (AMP, J01CA01) is not available but amoxicillin (AMX, J01CA04) is, the latter will be used for all rules where there is a dependency on ampicillin. These drugs are interchangeable when it comes to expression of antimicrobial resistance. \cr
#'
#' The file containing all interpretive rules is located here: <https://github.com/msberends/AMR/blob/main/data-raw/interpretive_rules.tsv>. **Note:** Old taxonomic names are replaced with the current taxonomy where applicable. For example, *Ochrobactrum anthropi* was renamed to *Brucella anthropi* in 2020; the original EUCAST rules v3.1 and v3.2 did not yet contain this new taxonomic name. The `AMR` package contains the full microbial taxonomy updated until `r documentation_date(max(TAXONOMY_VERSION$GBIF$accessed_date, TAXONOMY_VERSION$LPSN$accessed_date))`, see [microorganisms].
#' The file containing all interpretive rules is located here: <https://github.com/msberends/AMR/blob/main/data-raw/interpretive_rules.tsv>. **Note:** Old taxonomic names are replaced with the current taxonomy where applicable. For example, *Ochrobactrum anthropi* was renamed to *Brucella anthropi* in 2020; older interpretive rules may not yet contain this new taxonomic name. The `AMR` package contains the full microbial taxonomy updated until `r documentation_date(max(TAXONOMY_VERSION$GBIF$accessed_date, TAXONOMY_VERSION$LPSN$accessed_date))`, see [microorganisms].
#'
#' ### Custom Rules
#'