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@@ -7,7 +7,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9139</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9140</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@@ -99,42 +99,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.005 4 0.005 8 0.0625 2 0.125 0.025 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.002 0.001 32 8 64 16 0.01 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 16 0.0625 32 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 4 0.25 0.125 0.125 4 0.001 0.0625 32 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 2 2 4 16 0.0625 0.001 0.5 0.25 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 32 0.25 2 2 0.125 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 25 50 41 34 45 37 31 14 48 43 11 44 45 22 49 42 29 36 50 31 41 49 23 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 6 44 14 31 8 38 41 16 35 39 22 46 25 47 11 44 26 20 17 35 37 22 32 43 14</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R S R S S R I R R R I S R I R I S I S R I R R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I I S S S R R I I S S R R I I I I I I S R I R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 16 8 0.025 32 1 2 0.025 64 0.25 1 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 32 1 0.5 16 0.25 0.125 0.025 1 0.001 0.125 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.25 >=64 32 2 4 0.01 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 32 0.0625 0.025 <=0.001 1 4 >=64 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 4 0.005 8 1 4 0.002 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=32 8 2 2 16 1 2 2 2 4 2 >=32 16 >=32 >=32</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 4 1 2 16 4 >=32 8 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 16 8 8 2 32 4 8 16 4 16 <=1 16 >=64 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=64 8 >=64 4 >=64 <=1 4 4 >=64 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.0625 >=16 8 2 0.0625 1 0.125 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 4 0.0625 0.25 1 0.0625 1 0.125 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 2 4 0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 1 4 1 1 0.25 0.0625 0.25 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 <=0.025 <=0.025 0.5 1 <=0.025 0.25 4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 0.125 0.5 1 1 1 <=0.025</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 47 47 49 23 43 41 49 31 43 26 46 49 48 49 42 40 24 44 23 50 11 42 13 33</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 48 26 34 22 36 47 21 21 45 46 8 11 39 17 17 45 19 44 37 21 25 16 48 44</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 12 13 11 17 16 11 14 17 17 16 11 15 14 16 12 15 16 14 15 13 16 14 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 13 14 14 12 12 12 15 17 11 11 15 17 16 15 15 16 12 11 12 15 17 13 14 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 27 19 22 22 27 17 19 25 25 27 16 25 24 15 24 27 25 26 21 22 23 25 23 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 25 26 15 23 20 26 22 20 16 26 17 21 17 23 17 22 26 27 15 17 25 21 18 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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