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(v1.2.0.9021) only progressbar in interactive sessions

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dr. M.S. (Matthijs) Berends 2020-07-01 11:51:26 +02:00
parent cc6ce0a938
commit afc660dc33
13 changed files with 16 additions and 16 deletions
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2
DESCRIPTION
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@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 1.2.0.9020 Version: 1.2.0.9021
Date: 2020-07-01 Date: 2020-07-01
Title: Antimicrobial Resistance Analysis Title: Antimicrobial Resistance Analysis
Authors@R: c( Authors@R: c(

2
NEWS.md
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@ -1,4 +1,4 @@
# AMR 1.2.0.9020 # AMR 1.2.0.9021
## <small>Last updated: 01-Jul-2020</small> ## <small>Last updated: 01-Jul-2020</small>
### New ### New

2
R/aa_helper_functions.R
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@ -411,7 +411,7 @@ font_stripstyle <- function(x) {
} }
progress_estimated <- function(n = 1, n_min = 0, ...) { progress_estimated <- function(n = 1, n_min = 0, ...) {
if (n >= n_min) { if (n >= n_min & interactive()) {
pb <- utils::txtProgressBar(max = n, style = 3) pb <- utils::txtProgressBar(max = n, style = 3)
pb$tick <- function() { pb$tick <- function() {
pb$up(pb$getVal() + 1) pb$up(pb$getVal() + 1)

2
R/ab_from_text.R
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@ -124,7 +124,7 @@ ab_from_text <- function(text,
as.ab(NA) as.ab(NA)
} else { } else {
if (!isFALSE(translate_ab)) { if (!isFALSE(translate_ab)) {
out <- ab_property(out, property = translate_ab, initial = FALSE) out <- ab_property(out, property = translate_ab, initial_search = FALSE)
} }
out out
} }

2
R/key_antibiotics.R
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@ -327,7 +327,7 @@ key_antibiotics_equal <- function(y,
} }
} }
if (info_needed == TRUE) { if (info_needed == TRUE) {
cat("\n") close(p)
} }
result result
} }

2
docs/404.html
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@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="https://msberends.gitlab.io/AMR/index.html">AMR (for R)</a> <a class="navbar-link" href="https://msberends.gitlab.io/AMR/index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>

2
docs/LICENSE-text.html
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@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>

2
docs/articles/index.html
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@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>

2
docs/authors.html
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@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>

2
docs/index.html
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@ -43,7 +43,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>

8
docs/news/index.html
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@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>
@ -229,9 +229,9 @@
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small> <small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div> </div>
<div id="amr-1209020" class="section level1"> <div id="amr-1209021" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9020"> <h1 class="page-header" data-toc-text="1.2.0.9021">
<a href="#amr-1209020" class="anchor"></a>AMR 1.2.0.9020<small> Unreleased </small> <a href="#amr-1209021" class="anchor"></a>AMR 1.2.0.9021<small> Unreleased </small>
</h1> </h1>
<div id="last-updated-01-jul-2020" class="section level2"> <div id="last-updated-01-jul-2020" class="section level2">
<h2 class="hasAnchor"> <h2 class="hasAnchor">

2
docs/pkgdown.yml
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@ -10,7 +10,7 @@ articles:
WHONET: WHONET.html WHONET: WHONET.html
benchmarks: benchmarks.html benchmarks: benchmarks.html
resistance_predict: resistance_predict.html resistance_predict: resistance_predict.html
last_built: 2020-07-01T09:22Z last_built: 2020-07-01T09:51Z
urls: urls:
reference: https://msberends.gitlab.io/AMR/reference reference: https://msberends.gitlab.io/AMR/reference
article: https://msberends.gitlab.io/AMR/articles article: https://msberends.gitlab.io/AMR/articles

2
docs/reference/index.html
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@ -81,7 +81,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9020</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9021</span>
</span> </span>
</div> </div>