P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 17:02:03 +02:00
Code Releases Activity

fix txt export of microorganisms

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-10-29 16:08:18 +02:00
parent 6ad7857d39
commit afdc48db1e
6 changed files with 48898 additions and 12 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
vignettes/datasets.Rmd
View File

@ -125,6 +125,8 @@ This data set is in R available as `microorganisms`, after you load the `AMR` pa
**NOTE: The exported files for Excel, SAS, SPSS and Stata contain only the first 50 SNOMED codes per record, as their file size would otherwise exceed 100 MB; the file size limit of GitHub.** Advice? Use R instead.
The tab-separated text file contains all SNOMED codes as comma separated values.
### Source
This data set contains the full microbial taxonomy of `r AMR:::nr2char(length(unique(AMR::microorganisms$kingdom[!AMR::microorganisms$kingdom %like% "unknown"])))` kingdoms from the List of Prokaryotic names with Standing in Nomenclature (LPSN) and the Global Biodiversity Information Facility (GBIF):