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fix txt export of microorganisms

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dr. M.S. (Matthijs) Berends committed 2022-10-29 16:08:18 +02:00
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vignettes/datasets.Rmd
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@@ -125,6 +125,8 @@ This data set is in R available as `microorganisms`, after you load the `AMR` pa
**NOTE: The exported files for Excel, SAS, SPSS and Stata contain only the first 50 SNOMED codes per record, as their file size would otherwise exceed 100 MB; the file size limit of GitHub.** Advice? Use R instead.
The tab-separated text file contains all SNOMED codes as comma separated values.
### Source
This data set contains the full microbial taxonomy of `r AMR:::nr2char(length(unique(AMR::microorganisms$kingdom[!AMR::microorganisms$kingdom %like% "unknown"])))` kingdoms from the List of Prokaryotic names with Standing in Nomenclature (LPSN) and the Global Biodiversity Information Facility (GBIF):