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(v0.7.1.9009) note for WHOCC

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dr. M.S. (Matthijs) Berends
2019-07-09 11:22:46 +02:00
parent d9e257f8db
commit b15d59cf03
34 changed files with 711 additions and 41 deletions
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2
R/mo_property.R
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@ -157,7 +157,7 @@ mo_shortname <- function(x, language = get_locale(), ...) {
# exceptions for Staphylococci
shortnames[shortnames == "S. coagulase-negative" ] <- "CoNS"
shortnames[shortnames == "S. coagulase-positive" ] <- "CoPS"
# exceptions for Streptococci
# exceptions for Streptococci: Streptococcus Group A -> GAS
shortnames[shortnames %like% "S. group [ABCDFGHK]"] <- paste0("G", gsub("S. group ([ABCDFGHK])", "\\1", shortnames[shortnames %like% "S. group [ABCDFGHK]"]), "S")
load_mo_failures_uncertainties_renamed(metadata)