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(v1.6.0.9055) support codecov again

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dr. M.S. (Matthijs) Berends
2021-05-21 20:20:51 +02:00
parent fecc5d183c
commit b210f1327c
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NEWS.md
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# `AMR` 1.6.0.9054
## <small>Last updated: 20 May 2021</small>
# `AMR` 1.6.0.9055
## <small>Last updated: 21 May 2021</small>
### Breaking change
* All antibiotic class selectors (such as `carbapenems()`, `aminoglycosides()`) can now be used for filtering as well, making all their accompanying `filter_*()` functions redundant (such as `filter_carbapenems()`, `filter_aminoglycosides()`). These functions are now deprecated and will be removed in a next release.
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* Updated `skimr::skim()` usage for MIC values to also include 25th and 75th percentiles
* Fix for plotting missing MIC/disk diffusion values
* Updated join functions to always use `dplyr` join functions if the `dplyr` package is installed - now also preserving grouped variables
* Updates for filtering on antibiotic classes (e.g., using `filter_carbapenems()`):
* Support for dplyr groups
* Support for base R row filtering:
```r
dim(example_isolates)
#> [1] 2000 49
example_isolates[filter_carbapenems(), ]
#> ℹ Applying `filter_carbapenems()`: values in any of columns 'IPM' (imipenem)
#> or 'MEM' (meropenem) are either "R", "S" or "I"
#> [1] 962 49
```
* Antibiotic class selectors (such as `cephalosporins()`) now maintain the column order from the original data
* Fix for selecting columns using `fluoroquinolones()`