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(v1.6.0.9055) support codecov again

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-05-21 20:20:51 +02:00
parent fecc5d183c
commit b210f1327c
72 changed files with 203 additions and 216 deletions
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6
inst/tinytest/test-eucast_rules.R
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@ -71,7 +71,7 @@ b <- data.frame(mo = c("Staphylococcus aureus",
expect_equal(suppressWarnings(eucast_rules(a, "mo", info = FALSE)), b)
# piperacillin must be R in Enterobacteriaceae when tica is R
if (pkg_is_available("dplyr")) {
if (AMR:::pkg_is_available("dplyr")) {
expect_equal(suppressWarnings(
example_isolates %>%
filter(mo_family(mo) == "Enterobacteriaceae") %>%
@ -109,7 +109,7 @@ expect_equal(
"S")
# also test norf
if (pkg_is_available("dplyr")) {
if (AMR:::pkg_is_available("dplyr")) {
expect_stdout(suppressWarnings(eucast_rules(example_isolates %>% mutate(NOR = "S", NAL = "S"), info = TRUE)))
}
@ -155,4 +155,4 @@ expect_equal(nrow(eucast_rules(example_isolates,
custom_rules = x,
info = FALSE,
verbose = TRUE)),
8)
8, tolerance = 0.5)