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(v1.6.0.9055) support codecov again

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dr. M.S. (Matthijs) Berends
2021-05-21 20:20:51 +02:00
parent fecc5d183c
commit b210f1327c
72 changed files with 203 additions and 216 deletions
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4
inst/tinytest/test-resistance_predict.R
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@@ -23,7 +23,7 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
if (pkg_is_available("dplyr")) {
if (AMR:::pkg_is_available("dplyr")) {
expect_stdout(AMX_R <- example_isolates %>%
filter(mo == "B_ESCHR_COLI") %>%
rsi_predict(col_ab = "AMX",
@@ -43,7 +43,7 @@ expect_stdout(x <- suppressMessages(resistance_predict(example_isolates,
info = TRUE)))
pdf(NULL) # prevent Rplots.pdf being created
expect_silent(plot(x))
if (pkg_is_available("ggplot2")) {
if (AMR:::pkg_is_available("ggplot2")) {
expect_silent(ggplot_rsi_predict(x))
expect_silent(ggplot(x))
expect_error(ggplot_rsi_predict(example_isolates))