mirror of
https://github.com/msberends/AMR.git
synced 2025-07-08 20:02:04 +02:00
Built site for AMR: 1.8.2.9042@3b65298
This commit is contained in:
@ -38,7 +38,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9041</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9042</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -161,7 +161,7 @@
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.svg" class="logo" alt=""><h1>Data sets for download / own use</h1>
|
||||
|
||||
<h4 data-toc-skip class="date">31 October 2022</h4>
|
||||
<h4 data-toc-skip class="date">05 November 2022</h4>
|
||||
|
||||
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
|
||||
<div class="d-none name"><code>datasets.Rmd</code></div>
|
||||
@ -191,7 +191,7 @@ column names:<br><em>mo</em>, <em>fullname</em>, <em>status</em>, <em>kingdom</e
|
||||
<em>gbif_renamed_to</em>, <em>prevalence</em> and <em>snomed</em>.</p>
|
||||
<p>This data set is in R available as <code>microorganisms</code>, after
|
||||
you load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/microorganisms.html">here</a>.</p>
|
||||
<p><strong>Direct download links:</strong></p>
|
||||
<ul>
|
||||
@ -490,7 +490,7 @@ column names:<br><em>ab</em>, <em>cid</em>, <em>name</em>, <em>group</em>, <em>a
|
||||
<em>iv_ddd</em>, <em>iv_units</em> and <em>loinc</em>.</p>
|
||||
<p>This data set is in R available as <code>antibiotics</code>, after
|
||||
you load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
|
||||
<p><strong>Direct download links:</strong></p>
|
||||
<ul>
|
||||
@ -687,7 +687,7 @@ column names:<br><em>atc</em>, <em>cid</em>, <em>name</em>, <em>atc_group</em>,
|
||||
<em>iv_ddd</em> and <em>iv_units</em>.</p>
|
||||
<p>This data set is in R available as <code>antivirals</code>, after you
|
||||
load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/antibiotics.html">here</a>.</p>
|
||||
<p><strong>Direct download links:</strong></p>
|
||||
<ul>
|
||||
@ -847,7 +847,7 @@ column names:<br><em>guideline</em>, <em>method</em>, <em>site</em>, <em>mo</em>
|
||||
<em>breakpoint_S</em>, <em>breakpoint_R</em> and <em>uti</em>.</p>
|
||||
<p>This data set is in R available as <code>rsi_translation</code>,
|
||||
after you load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/rsi_translation.html">here</a>.</p>
|
||||
<p><strong>Direct download links:</strong></p>
|
||||
<ul>
|
||||
@ -1020,7 +1020,7 @@ Resistance<a class="anchor" aria-label="anchor" href="#intrinsic_resistant-intri
|
||||
column names:<br><em>mo</em> and <em>ab</em>.</p>
|
||||
<p>This data set is in R available as <code>intrinsic_resistant</code>,
|
||||
after you load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/intrinsic_resistant.html">here</a>.</p>
|
||||
<p><strong>Direct download links:</strong></p>
|
||||
<ul>
|
||||
@ -1308,7 +1308,7 @@ column names:<br><em>ab</em>, <em>name</em>, <em>type</em>, <em>dose</em>,
|
||||
<em>original_txt</em> and <em>eucast_version</em>.</p>
|
||||
<p>This data set is in R available as <code>dosage</code>, after you
|
||||
load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/dosage.html">here</a>.</p>
|
||||
<p><strong>Direct download links:</strong></p>
|
||||
<ul>
|
||||
@ -1458,7 +1458,7 @@ column names:<br><em>date</em>, <em>patient</em>, <em>age</em>, <em>gender</em>,
|
||||
<em>MUP</em> and <em>RIF</em>.</p>
|
||||
<p>This data set is in R available as <code>example_isolates</code>,
|
||||
after you load the <code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/example_isolates.html">here</a>.</p>
|
||||
<div class="section level3">
|
||||
<h3 id="source-6">Source<a class="anchor" aria-label="anchor" href="#source-6"></a>
|
||||
@ -1871,7 +1871,7 @@ column names:<br><em>patient_id</em>, <em>hospital</em>, <em>date</em>,
|
||||
<p>This data set is in R available as
|
||||
<code>example_isolates_unclean</code>, after you load the
|
||||
<code>AMR</code> package.</p>
|
||||
<p>It was last updated on 31 October 2022 12:26:45 UTC. Find more info
|
||||
<p>It was last updated on 5 November 2022 07:20:03 UTC. Find more info
|
||||
about the structure of this data set <a href="https://msberends.github.io/AMR/reference/example_isolates_unclean.html">here</a>.</p>
|
||||
<div class="section level3">
|
||||
<h3 id="source-7">Source<a class="anchor" aria-label="anchor" href="#source-7"></a>
|
||||
|
Reference in New Issue
Block a user