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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9041</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9042</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,41 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.0625 0.005 8 2 16 16 256 0.5 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.005 0.125 0.01 8 0.002 4 256 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 128 2 16 64 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.01 2 0.5 8 1 2 2 0.5 0.5 0.001 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.002 0.25 1 0.005 64 64 0.5 4 128 0.002 0.01 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 32 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 10 46 14 41 48 36 46 11 6 23 45 46 50 17 45 32 19 18 49 43 40 47 49 44 48</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 40 49 45 11 23 49 42 12 7 44 50 23 47 41 27 47 50 33 18 18 38 21 40 12</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I I S I I I I R R I I I R I S R S I S I I R R R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R I R R I I R I S I R S S R S I I R S S I R R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.001 0.25 0.005 0.002 0.005 4 1 0.01 4 256 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 16 128 2 0.25 0.001 8 0.25 8 0.005 256 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.025 128 0.5 0.002 4 0.125 0.125 0.5 8 0.01 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 2 64 0.5 0.5 0.025 0.01 8 0.125 0.5 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 2 4 4 2 >=16 1 4 >=16 8 1 8 2 >=16 >=16</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 4 8 2 2 >=16 4 4 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 16 2 2 2 8 8 2 4 1 2 1 1 4 1 1 16 8 16 4 2 8 1 2 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.025 0.5 0.25 >=16 <=0.025 <=0.025 0.5 >=16 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.025 <=0.025 0.125 0.5 4 2 >=16 8 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 1 1 0.25 0.25 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 0.125 0.0625 0.125 0.125 4 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.125 0.5 <=0.025 0.25 2 <=0.025 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 4 0.25 2 <=0.025 0.25 0.25 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 40 37 45 48 39 40 9 41 36 15 22 20 50 30 12 12 45 34 40 24 41 35 41 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 31 45 32 40 26 48 46 43 10 41 45 33 23 41 25 26 18 16 16 49 26 14 21 10</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 14 17 17 12 16 11 13 12 17 13 11 12 17 11 12 14 14 13 15 16 13 16 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 13 13 17 14 11 15 11 12 15 15 15 12 14 13 16 16 15 14 15 16 16 16 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 17 26 27 27 15 20 26 20 23 27 23 22 21 17 16 18 23 20 20 19 19 23 18 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 22 23 20 25 24 26 24 27 18 22 21 22 26 25 24 15 15 22 20 22 22 20 25 21</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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