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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S R R S I S</span></span>
<span><span class="co"># 2 I R S S S S</span></span>
<span><span class="co"># 3 I R S R S S</span></span>
<span><span class="co"># 4 R R S I I R</span></span>
<span><span class="co"># 5 S I R I S R</span></span>
<span><span class="co"># 6 S I I I I R</span></span>
<span><span class="co"># 1 R I I S S S</span></span>
<span><span class="co"># 2 R R I R S R</span></span>
<span><span class="co"># 3 R R I R R I</span></span>
<span><span class="co"># 4 R R R R S S</span></span>
<span><span class="co"># 5 S I R I I I</span></span>
<span><span class="co"># 6 S R R S I S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3211</td>
<td align="right">64.22%</td>
<td align="right">3211</td>
<td align="right">64.22%</td>
<td align="right">3215</td>
<td align="right">64.30%</td>
<td align="right">3215</td>
<td align="right">64.30%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1047</td>
<td align="right">20.94%</td>
<td align="right">4258</td>
<td align="right">85.16%</td>
<td align="right">997</td>
<td align="right">19.94%</td>
<td align="right">4212</td>
<td align="right">84.24%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">410</td>
<td align="right">8.20%</td>
<td align="right">4668</td>
<td align="right">93.36%</td>
<td align="right">445</td>
<td align="right">8.90%</td>
<td align="right">4657</td>
<td align="right">93.14%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">248</td>
<td align="right">4.96%</td>
<td align="right">4916</td>
<td align="right">98.32%</td>
<td align="right">242</td>
<td align="right">4.84%</td>
<td align="right">4899</td>
<td align="right">97.98%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">84</td>
<td align="right">1.68%</td>
<td align="right">101</td>
<td align="right">2.02%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>