P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 01:22:25 +02:00
Code Releases Activity

v1.2.0

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-05-28 16:48:55 +02:00
parent d9a4b0bcaf
commit b44e2c9202
82 changed files with 448 additions and 517 deletions
Download Patch File Download Diff File Expand all files Collapse all files

18
docs/articles/WHONET.html
View File

@ -39,7 +39,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.1.0.9015</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0</span>
</span>
</div>
@ -186,7 +186,7 @@
<h1 data-toc-skip>How to work with WHONET data</h1>
<h4 class="author">Matthijs S. Berends</h4>
<h4 class="date">20 May 2020</h4>
<h4 class="date">28 May 2020</h4>
<small class="dont-index">Source: <a href="https://gitlab.com/msberends/AMR/blob/master/vignettes/WHONET.Rmd"><code>vignettes/WHONET.Rmd</code></a></small>
<div class="hidden name"><code>WHONET.Rmd</code></div>
@ -232,7 +232,7 @@
<p>Class: character<br>
Length: 500<br>
Available: 500 (100%, NA: 0 = 0%)<br>
Unique: 39</p>
Unique: 37</p>
<p>Shortest: 11<br>
Longest: 40</p>
<table class="table">
@ -319,15 +319,15 @@ Longest: 40</p>
</tr>
<tr class="even">
<td align="left">10</td>
<td align="left">Enterococcus columbae</td>
<td align="right">4</td>
<td align="right">0.8%</td>
<td align="right">443</td>
<td align="right">88.6%</td>
<td align="left">Streptococcus anginosus</td>
<td align="right">5</td>
<td align="right">1.0%</td>
<td align="right">444</td>
<td align="right">88.8%</td>
</tr>
</tbody>
</table>
<p>(omitted 29 entries, n = 57 [11.40%])</p>
<p>(omitted 27 entries, n = 56 [11.20%])</p>
<div class="sourceCode" id="cb5"><html><body><pre class="r"><span class="co"># our transformed antibiotic columns</span>
<span class="co"># amoxicillin/clavulanic acid (J01CR02) as an example</span>
<span class="no">data</span> <span class="kw">%&gt;%</span> <span class="fu"><a href="https://rdrr.io/pkg/cleaner/man/freq.html">freq</a></span>(<span class="no">AMC_ND2</span>)</pre></body></html></div>