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(v0.7.1.9010) eucast informative text in verbose mode

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dr. M.S. (Matthijs) Berends
2019-07-09 13:36:03 +02:00
parent b15d59cf03
commit b452de2fe4
11 changed files with 34 additions and 22 deletions
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NEWS.md
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# AMR 0.7.1.9009
# AMR 0.7.1.9010
### New
* Additional way to calculate co-resistance, i.e. when using multiple antibiotics as input for `portion_*` functions or `count_*` functions. This can be used to determine the empiric susceptibily of a combination therapy. A new parameter `only_all_tested` (**which defaults to `FALSE`**) replaces the old `also_single_tested` and can be used to select one of the two methods to count isolates and calculate portions. The difference can be seen in this example table (which is also on the `portion` and `count` help pages), where the %SI is being determined:
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* Fix for frequency tables when creating one directly on a group (using `group_by()`)
* The name of `RIF` is now Rifampicin instead of Rifampin
* The `antibiotics` data set is now sorted by name
* Using verbose mode with `eucast_rules(..., verbose = TRUE)` returns more informative and readable output
# AMR 0.7.1