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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9027</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9029</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 64 >=256 32 32 128 0.01 32 2 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.002 >=256 128 0.5 0.5 128 1 0.25 16 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 0.125 8 64 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 64 4 32 2 0.002 32 0.125 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 256 0.25 16 0.01 8 16 2 0.002 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 128 0.0625 1 8 <=0.001 0.002 256 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 7 49 39 44 46 6 28 50 31 38 13 26 49 49 16 23 22 43 44 26 45 38 46 50 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 13 12 37 22 21 18 18 43 46 34 39 50 7 34 40 40 43 27 50 38 17 20 43 20</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S I S S S S I S R I I S I R S I I S S S I S R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I R S I I R I S I S S R I I I I R R S I R S R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.025 0.25 0.5 8 0.5 2 0.025 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 <=0.001 0.0625 0.125 0.005 4 16 <=0.001 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 0.01 64 0.025 8 0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.125 16 0.0625 4 128 0.005 2 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 128 8 0.125 1 16 1 >=256 0.01 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.01 64 32 64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 >=16 8 4 1 4 0.5 1 1 0.5 4 4 >=16 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 0.5 >=16 0.5 4 1 2 4 4 1 >=16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=32 16 8 1 2 1 1 8 16 2 4 2 4 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 8 16 1 >=32 8 2 1 16 8 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 1 <=0.125 1 0.25 >=16 1 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 <=0.125 >=16 8 8 0.25 8 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 <=0.125 0.25 2 0.25 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=4 1 0.25 0.25 1 1 >=4 0.125 2 1 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 0.125 1 0.5 1 2 2 >=4 1 0.5 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=4 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 29 40 23 36 28 16 26 47 44 26 47 47 42 47 47 13 25 47 42 43 38 44 50 31</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 13 25 42 48 40 14 25 25 50 31 21 41 40 44 18 49 50 40 25 25 10 49 12 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 17 11 16 15 16 13 15 15 12 13 17 16 11 12 13 11 14 13 12 16 12 17 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 12 16 12 12 12 12 17 13 17 11 12 13 17 13 14 13 12 16 14 15 16 17 17 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 26 15 16 18 21 20 23 24 19 20 20 27 24 16 24 19 19 18 16 25 24 22 21 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 25 20 19 17 27 25 16 22 22 25 23 16 16 27 25 19 18 21 25 22 18 20 18 19</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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