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(v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR)

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2026-03-03 15:41:08 +01:00
parent 12cf144b19
commit b6211931f8
25 changed files with 162 additions and 74 deletions

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# AMR 3.0.1.9021
# AMR 3.0.1.9022
### New
* Integration with the **tidymodels** framework to allow seamless use of SIR, MIC and disk data in modelling pipelines via `recipes`
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- `all_mic()`, `all_mic_predictors()`
- `all_disk()`, `all_disk_predictors()`
* Data set `esbl_isolates` to practise with AMR modelling
* AMR selectors `phosphonics()` and `spiropyrimidinetriones()`
* AMR selectors `peptides()`, `phosphonics()` and `spiropyrimidinetriones()`
* Antimicrobials in the `antimicrobials` data set: ceftibuten/avibactam (`CTA`), kasugamycin (`KAS`), ostreogrycin (`OST`), thiostrepton (`THS`), xeruborbactam (`XER`), zorbamycin (`ZOR`)
* Support for Wildtype (WT) / Non-wildtype (NWT) in `as.sir()`, all plotting functions, and all susceptibility/resistance functions.
- `as.sir()` gained an argument `as_wt_nwt`, which defaults to `TRUE` only when `breakpoint_type = "ECOFF"` (#254)
- This transforms the output from S/R to WT/NWT