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(v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR)

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dr. M.S. (Matthijs) Berends
2026-03-03 15:41:08 +01:00
parent 12cf144b19
commit b6211931f8
25 changed files with 162 additions and 74 deletions
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6
R/mic.R
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@@ -126,7 +126,7 @@ COMMON_MIC_VALUES <- c(
#' # this can also coerce combined MIC/SIR values:
#' as.mic("<=0.002; S")
#'
#' # mathematical processing treats MICs as numeric values
#' # mathematical processing treats MICs as, and returns, numeric values
#' fivenum(mic_data)
#' quantile(mic_data)
#' all(mic_data < 512)
@@ -134,6 +134,10 @@ COMMON_MIC_VALUES <- c(
#' # rescale MICs using rescale_mic()
#' rescale_mic(mic_data, mic_range = c(4, 16))
#'
#' # round up to nearest log2 level, e.g. for CLSI breakpoint interpretation:
#' c(1:8)
#' as.mic(c(1:8), round_to_next_log2 = TRUE)
#'
#' # interpret MIC values
#' as.sir(
#' x = as.mic(2),