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(v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR)

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dr. M.S. (Matthijs) Berends
2026-03-03 15:41:08 +01:00
parent 12cf144b19
commit b6211931f8
25 changed files with 162 additions and 74 deletions
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8
R/zzz.R
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@@ -118,18 +118,12 @@ AMR_env$cross_icon <- if (isTRUE(base::l10n_info()$`UTF-8`)) "\u00d7" else "x"
if (interactive() && is.null(getOption("AMR_guideline"))) {
packageStartupMessage(
word_wrap(
"Welcome to AMR v", format(utils::packageVersion("AMR")), ". ",
"You have not set the 'AMR_guideline' option to either \"CLSI\" or \"EUCAST\". ",
"You can set it using either:\n",
" options(AMR_guideline = \"CLSI\")\n",
" options(AMR_guideline = \"EUCAST\")\n",
"See `?AMR-options`. While unset, the AMR package uses the current default guideline: ", AMR::clinical_breakpoints$guideline[1], ".",
"Assuming ", AMR::clinical_breakpoints$guideline[1], " as the default AMR guideline, see `?AMR-options` to change this.",
add_fn = NULL
)
)
}
# if custom ab option is available, load it
if (!is.null(getOption("AMR_custom_ab")) && file.exists(getOption("AMR_custom_ab", default = ""))) {
if (getOption("AMR_custom_ab") %unlike% "[.]rds$") {