P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 01:42:08 +02:00
Code Releases Activity

fix for mo type translation

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-10-06 12:11:51 +02:00
parent b9342d103e
commit b753b84128
6 changed files with 22 additions and 20 deletions
Download Patch File Download Diff File Expand all files Collapse all files

15
man/mo_property.Rd
View File

@ -400,10 +400,10 @@ mo_shortname("K. pneu rh")
\donttest{
# Becker classification, see ?as.mo ----------------------------------------
mo_fullname("Staph. epi")
mo_fullname("Staph. epi", Becker = TRUE)
mo_shortname("Staph. epi")
mo_shortname("Staph. epi", Becker = TRUE)
mo_fullname("Staph. epidermidis")
mo_fullname("Staph. epidermidis", Becker = TRUE)
mo_shortname("Staph. epidermidis")
mo_shortname("Staph. epidermidis", Becker = TRUE)
# Lancefield classification, see ?as.mo ------------------------------------
mo_fullname("S. pyo")
@ -422,7 +422,8 @@ mo_gramstain("Klebsiella pneumoniae", language = "uk") # Ukrainian
# mo_type is equal to mo_kingdom, but mo_kingdom will remain official
mo_kingdom("Klebsiella pneumoniae")
mo_type("Klebsiella pneumoniae")
mo_type("Klebsiella pneumoniae", language = "nl")
mo_kingdom("Klebsiella pneumoniae", language = "zh") # Chinese, no effect
mo_type("Klebsiella pneumoniae", language = "zh") # Chinese, translated
mo_fullname("S. pyogenes", Lancefield = TRUE, language = "de")
mo_fullname("S. pyogenes", Lancefield = TRUE, language = "uk")
@ -436,12 +437,12 @@ mo_is_yeast(c("Candida", "Trichophyton", "Klebsiella"))
if (require("dplyr")) {
example_isolates \%>\%
filter(mo_is_gram_positive()) \%>\%
count(mo_genus(), count = TRUE)
count(mo_genus(), sort = TRUE)
}
if (require("dplyr")) {
example_isolates \%>\%
filter(mo_is_intrinsic_resistant(ab = "vanco")) \%>\%
count(mo_genus(), count = TRUE)
count(mo_genus(), sort = TRUE)
}