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added prevalence column and alterted as.mo algorith to use it, added ab_name as alias

This commit is contained in:
2018-09-16 16:43:29 +02:00
parent b0ca49d68d
commit b792a2754e
16 changed files with 101 additions and 79 deletions

View File

@ -21,6 +21,7 @@
#' Use these functions to return a specific property of an antibiotic from the \code{\link{antibiotics}} data set, based on their ATC code. Get such a code with \code{\link{as.atc}}.
#' @param x a (vector of a) valid \code{\link{atc}} code or any text that can be coerced to a valid atc with \code{\link{as.atc}}
#' @param property one of the column names of one of the \code{\link{antibiotics}} data set, like \code{"atc"} and \code{"official"}
#' @param language language of the returned text, defaults to the systems language. Either one of \code{"en"} (English) or \code{"nl"} (Dutch).
#' @rdname ab_property
#' @return A vector of values. In case of \code{ab_tradenames}, if \code{x} is of length one, a vector will be returned. Otherwise a \code{\link{list}}, with \code{x} as names.
#' @export
@ -28,8 +29,8 @@
#' @seealso \code{\link{antibiotics}}
#' @examples
#' ab_atc("amcl") # J01CR02
#' ab_official("amcl") # Amoxicillin and beta-lactamase inhibitor
#' ab_official_nl("amcl") # Amoxicilline met enzymremmer
#' ab_name("amcl") # Amoxicillin and beta-lactamase inhibitor
#' ab_name("amcl", "nl") # Amoxicilline met enzymremmer
#' ab_trivial_nl("amcl") # Amoxicilline/clavulaanzuur
#' ab_certe("amcl") # amcl
#' ab_umcg("amcl") # AMCL
@ -56,15 +57,25 @@ ab_atc <- function(x) {
#' @rdname ab_property
#' @export
ab_official <- function(x) {
ab_property(x, "official")
ab_official <- function(x, language = NULL) {
if (is.null(language)) {
language <- Sys.locale()
} else {
language <- tolower(language[1])
}
if (language %in% c("en", "")) {
ab_property(x, "official")
} else if (language == "nl") {
ab_property(x, "official_nl")
} else {
stop("Unsupported language: '", language, "' - use one of: 'en', 'nl'", call. = FALSE)
}
}
#' @rdname ab_property
#' @export
ab_official_nl <- function(x) {
ab_property(x, "official_nl")
}
ab_name <- ab_official
#' @rdname ab_property
#' @export