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Update first_isolates.R

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MS Berends 2018-03-29 15:15:31 +02:00 committed by GitHub
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1 changed files with 9 additions and 9 deletions
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R/first_isolates.R
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@ -123,15 +123,15 @@ first_isolate <- function(tbl,
col_species = NA) { col_species = NA) {
# support tidyverse-like quotation # support tidyverse-like quotation
col_date <- quasiquotate(deparse(substitute(col_date)), col_date) # col_date <- quasiquotate(deparse(substitute(col_date)), col_date)
col_patient_id <- quasiquotate(deparse(substitute(col_patient_id)), col_patient_id) # col_patient_id <- quasiquotate(deparse(substitute(col_patient_id)), col_patient_id)
col_bactid <- quasiquotate(deparse(substitute(col_bactid)), col_bactid) # col_bactid <- quasiquotate(deparse(substitute(col_bactid)), col_bactid)
col_genus <- quasiquotate(deparse(substitute(col_genus)), col_genus) # col_genus <- quasiquotate(deparse(substitute(col_genus)), col_genus)
col_species <- quasiquotate(deparse(substitute(col_species)), col_species) # col_species <- quasiquotate(deparse(substitute(col_species)), col_species)
col_testcode <- quasiquotate(deparse(substitute(col_testcode)), col_testcode) # col_testcode <- quasiquotate(deparse(substitute(col_testcode)), col_testcode)
col_specimen <- quasiquotate(deparse(substitute(col_specimen)), col_specimen) # col_specimen <- quasiquotate(deparse(substitute(col_specimen)), col_specimen)
col_icu <- quasiquotate(deparse(substitute(col_icu)), col_icu) # col_icu <- quasiquotate(deparse(substitute(col_icu)), col_icu)
col_keyantibiotics <- quasiquotate(deparse(substitute(col_keyantibiotics)), col_keyantibiotics) # col_keyantibiotics <- quasiquotate(deparse(substitute(col_keyantibiotics)), col_keyantibiotics)
# check if columns exist # check if columns exist
check_columns_existance <- function(column, tblname = tbl) { check_columns_existance <- function(column, tblname = tbl) {