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(v1.8.1.9012) update prevalence of some genera

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dr. M.S. (Matthijs) Berends committed 2022-06-03 13:28:55 +02:00
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@@ -278,9 +278,9 @@
"Adelosina duthiersi" "Quinqueloculina duthiersi" "Schlumberger, 1886" 3
"Adelosina linneiana" "Pseudotriloculina linneiana" "DOrbigny, 1839" 3
"Aecidium ipomoeae-panduratae" "Albugo ipomoeae-panduratae" "Schwein, 1822" 3
"Aedimorphus alboannulatus" "Aedes alboannulatus" "Theobald, 1905" 3
"Aedimorphus albotaeniatus" "Aedes albotaeniatus" "Theobald, 1903" 3
"Aedimorphus australis" "Aedes australis" "Taylor, 1914" 3
"Aedimorphus alboannulatus" "Aedes alboannulatus" "Theobald, 1905" 2
"Aedimorphus albotaeniatus" "Aedes albotaeniatus" "Theobald, 1903" 2
"Aedimorphus australis" "Aedes australis" "Taylor, 1914" 2
"Aegyria angustata" "Dysteria angustata" "Claparede et al., 1859" 3
"Aegyria astyla" "Dysteria astyla" "Maskell, 1887" 3
"Aegyria distyla" "Dysteria distyla" "Maskell, 1887" 3
@@ -880,7 +880,7 @@
"Astacolus subaculeata" "Vaginulinopsis subaculeata" "Cushman, 1923" 3
"Astacolus sublegumen" "Vaginulinopsis sublegumen" "Parr, 1950" 3
"Asterellina pulchella" "Eoeponidella pulchella" "Parker, 1952" 3
"Asterias ocellifera" "Nectria ocellifera" "Lamarck, 1816" 3
"Asterias ocellifera" "Nectria ocellifera" "Lamarck, 1816" 2
"Asterigerinata pulchella" "Eoeponidella pulchella" "Parker, 1952" 3
"Asteromella anthemidis" "Phoma anthemidis" "Ruppr, 1958" 2
"Asteromella longissima" "Phoma longissima" "Petr" 2
@@ -1324,8 +1324,8 @@
"Bacteriovorax marinus" "Halobacteriovorax marinus" "Baer et al., 2004" 2
"Bacteriovorax starrii" "Peredibacter starrii" "Baer et al., 2000" 2
"Bacteroides amylophilus" "Ruminobacter amylophilus" "Hamlin et al., 1956" 1
"Bacteroides asaccharolyticus" "Porphyromonas asaccharolytica" "Finegold et al., 1977" 3
"Bacteroides barnesiae" "Phocaeicola barnesiae" "Lan et al., 2006" 3
"Bacteroides asaccharolyticus" "Porphyromonas asaccharolytica" "Finegold et al., 1977" 2
"Bacteroides barnesiae" "Phocaeicola barnesiae" "Lan et al., 2006" 2
"Bacteroides bivius" "Prevotella bivia" "Holdeman et al., 1977" 2
"Bacteroides buccae" "Prevotella buccae" "Holdeman et al., 1982" 2
"Bacteroides buccalis" "Prevotella buccalis" "Shah et al., 1982" 2
@@ -1333,32 +1333,32 @@
"Bacteroides capillus" "Prevotella buccae" "Kornman et al., 1982" 2
"Bacteroides cellulosolvens" "Pseudobacteroides cellulosolvens" "Murray et al., 1984" 2
"Bacteroides chinchillae" "Bacteroides sartorii" "Kitahara et al., 2011"
"Bacteroides chinchillae" "Phocaeicola sartorii" "Kitahara et al., 2011" 3
"Bacteroides chinchillae" "Phocaeicola sartorii" "Kitahara et al., 2011" 2
"Bacteroides coagulans" "Ezakiella coagulans" "Eggerth et al., 1933" 2
"Bacteroides coprocola" "Phocaeicola coprocola" "Kitahara et al., 2005" 3
"Bacteroides coprophilus" "Phocaeicola coprophilus" "Hayashi et al., 2016" 3
"Bacteroides coprocola" "Phocaeicola coprocola" "Kitahara et al., 2005" 2
"Bacteroides coprophilus" "Phocaeicola coprophilus" "Hayashi et al., 2016" 2
"Bacteroides corporis" "Prevotella corporis" "Johnson et al., 1983" 2
"Bacteroides denticola" "Prevotella denticola" "Shah et al., 1982" 2
"Bacteroides disiens" "Prevotella disiens" "Holdeman et al., 1977" 2
"Bacteroides distasonis" "Parabacteroides distasonis" "Eggerth et al., 1933" 3
"Bacteroides dorei" "Phocaeicola dorei" "Bakir et al., 2016" 3
"Bacteroides endodontalis" "Porphyromonas endodontalis" "Van Steenbergen et al., 1984" 3
"Bacteroides distasonis" "Parabacteroides distasonis" "Eggerth et al., 1933" 2
"Bacteroides dorei" "Phocaeicola dorei" "Bakir et al., 2016" 2
"Bacteroides endodontalis" "Porphyromonas endodontalis" "Van Steenbergen et al., 1984" 2
"Bacteroides forsythus" "Tannerella forsythia" "Tanner et al., 1986" 3
"Bacteroides furcosus" "Anaerorhabdus furcosa" "Hauduroy et al., 1937" 2
"Bacteroides gingivalis" "Porphyromonas gingivalis" "Coykendall et al., 1980" 3
"Bacteroides goldsteinii" "Parabacteroides goldsteinii" "Song et al., 2006" 3
"Bacteroides gingivalis" "Porphyromonas gingivalis" "Coykendall et al., 1980" 2
"Bacteroides goldsteinii" "Parabacteroides goldsteinii" "Song et al., 2006" 2
"Bacteroides gracilis" "Campylobacter gracilis" "Tanner et al., 1981" 2
"Bacteroides heparinolyticus" "Prevotella heparinolytica" "Okuda et al., 1985" 2
"Bacteroides hypermegas" "Megamonas hypermegale" "Harrison et al., 1963" 2
"Bacteroides intermedius" "Prevotella intermedia" "Johnson et al., 1983" 2
"Bacteroides levii" "Porphyromonas levii" "Johnson et al., 1983" 3
"Bacteroides levii" "Porphyromonas levii" "Johnson et al., 1983" 2
"Bacteroides loescheii" "Prevotella loescheii" "Holdeman et al., 1982" 2
"Bacteroides macacae" "Porphyromonas macacae" "Coykendall et al., 1980" 3
"Bacteroides massiliensis" "Phocaeicola massiliensis" "Fenner et al., 2016" 3
"Bacteroides macacae" "Porphyromonas macacae" "Coykendall et al., 1980" 2
"Bacteroides massiliensis" "Phocaeicola massiliensis" "Fenner et al., 2016" 2
"Bacteroides melaninogenicus" "Prevotella melaninogenica" "Roy et al., 1982" 2
"Bacteroides melaninogenicus intermedius" "Prevotella intermedia" "Holdeman et al., 1970" 2
"Bacteroides melaninogenicus macacae" "Porphyromonas macacae" "Slots et al., 1980" 3
"Bacteroides merdae" "Parabacteroides merdae" "Johnson et al., 1986" 3
"Bacteroides melaninogenicus macacae" "Porphyromonas macacae" "Slots et al., 1980" 2
"Bacteroides merdae" "Parabacteroides merdae" "Johnson et al., 1986" 2
"Bacteroides microfusus" "Rikenella microfusus" "Kaneuchi et al., 1978" 3
"Bacteroides multiacidus" "Mitsuokella multacida" "Mitsuoka et al., 1974" 2
"Bacteroides nodosus" "Dichelobacter nodosus" "Mraz, 1963" 1
@@ -1366,19 +1366,19 @@
"Bacteroides oralis" "Prevotella oralis" "Loesche et al., 1964" 2
"Bacteroides oris" "Prevotella oris" "Holdeman et al., 1982" 2
"Bacteroides oulorum" "Prevotella oulorum" "Shah et al., 1985" 2
"Bacteroides paurosaccharolyticus" "Phocaeicola paurosaccharolyticus" "Ueki et al., 2011" 3
"Bacteroides paurosaccharolyticus" "Phocaeicola paurosaccharolyticus" "Ueki et al., 2011" 2
"Bacteroides pentosaceus" "Prevotella buccae" "Shah et al., 1982" 2
"Bacteroides plebeius" "Phocaeicola plebeius" "Kitahara et al., 2005" 3
"Bacteroides plebeius" "Phocaeicola plebeius" "Kitahara et al., 2005" 2
"Bacteroides pneumosintes" "Dialister pneumosintes" "Holdeman et al., 1970" 2
"Bacteroides praeacutus" "Tissierella praeacuta" "Holdeman et al., 1970" 2
"Bacteroides putredinis" "Alistipes putredinis" "Kelly, 1957" 3
"Bacteroides putredinis" "Alistipes putredinis" "Kelly, 1957" 2
"Bacteroides ruminicola" "Prevotella ruminicola" "Bryant et al., 1958" 2
"Bacteroides ruminicola brevis" "Prevotella brevis" "Bryant et al., 1958" 2
"Bacteroides salanitronis" "Phocaeicola salanitronis" "Lan et al., 2006" 3
"Bacteroides salivosus" "Porphyromonas macacae" "Love et al., 1987" 3
"Bacteroides salanitronis" "Phocaeicola salanitronis" "Lan et al., 2006" 2
"Bacteroides salivosus" "Porphyromonas macacae" "Love et al., 1987" 2
"Bacteroides salyersae" "Bacteroides salyersiae" "Song et al., 2005" 2
"Bacteroides sartorii" "Phocaeicola sartorii" "Clavel et al., 2012" 3
"Bacteroides splanchnicus" "Odoribacter splanchnicus" "Werner et al., 1975" 3
"Bacteroides sartorii" "Phocaeicola sartorii" "Clavel et al., 2012" 2
"Bacteroides splanchnicus" "Odoribacter splanchnicus" "Werner et al., 1975" 2
"Bacteroides succinogenes" "Fibrobacter succinogenes" "Hungate, 1950" 3
"Bacteroides suis" "Bacteroides pyogenes" "Benno et al., 1983" 2
"Bacteroides tectum" "Bacteroides pyogenes" "Love et al., 2019" 2
@@ -1386,7 +1386,7 @@
"Bacteroides termitidis" "Sebaldella termitidis" "Holdeman et al., 1970" 3
"Bacteroides ureolyticus" "Campylobacter ureolyticus" "Jackson et al., 1978" 2
"Bacteroides veroralis" "Prevotella veroralis" "Watabe et al., 1983" 2
"Bacteroides vulgatus" "Phocaeicola vulgatus" "Hahnke et al., 2016" 3
"Bacteroides vulgatus" "Phocaeicola vulgatus" "Hahnke et al., 2016" 2
"Bacteroides xylanolyticus" "Hungatella xylanolytica" "Scholten-Koerselman et al., 1988" 2
"Bacteroides zoogleoformans" "Prevotella zoogleoformans" "Cato et al., 1982"
"Bacteroides zoogleoformans" "Capsularis zoogleoformans" "Cato et al., 1982" 3
@@ -1650,27 +1650,27 @@
"Bolivinita subangularis" "Saidovina subangularis" "Brady, 1881" 3
"Bolivinita subangularis lineata" "Saidovina subangularis lineata" "Cushman, 1933" 3
"Borelis (Fasciolites) pygmaea" "Neoalveolina pygmaea" "Hanzawa, 1930" 3
"Borrelia baltazardi" "Borrelia baltazardii" "Karimi et al., 1983" 3
"Borrelia bavariensis" "Borrelia garinii bavariensis" "Margos et al., 2020" 3
"Borrelia turdae" "Borrelia turdi" "Fukunaga et al., 1997" 3
"Borreliella" "Borrelia" "Adeolu et al., 2015" 3
"Borreliella afzelii" "Borrelia afzelii" "Adeolu et al., 2018" 3
"Borreliella americana" "Borrelia americana" "Adeolu et al., 2018" 3
"Borrelia baltazardi" "Borrelia baltazardii" "Karimi et al., 1983" 2
"Borrelia bavariensis" "Borrelia garinii bavariensis" "Margos et al., 2020" 2
"Borrelia turdae" "Borrelia turdi" "Fukunaga et al., 1997" 2
"Borreliella" "Borrelia" "Adeolu et al., 2015" 2
"Borreliella afzelii" "Borrelia afzelii" "Adeolu et al., 2018" 2
"Borreliella americana" "Borrelia americana" "Adeolu et al., 2018" 2
"Borreliella bavariensis" "Borrelia bavariensis" "Adeolu et al., 2015"
"Borreliella bavariensis" "Borrelia garinii bavariensis" "Adeolu et al., 2015" 3
"Borreliella bissettiae" "Borrelia bissettiae" "Gupta, 2020" 3
"Borreliella burgdorferi" "Borrelia burgdorferi" "Adeolu et al., 2015" 3
"Borreliella californiensis" "Borrelia californiensis" "Gupta, 2020" 3
"Borreliella carolinensis" "Borrelia carolinensis" "Adeolu et al., 2015" 3
"Borreliella garinii" "Borrelia garinii" "Adeolu et al., 2015" 3
"Borreliella japonica" "Borrelia japonica" "Adeolu et al., 2015" 3
"Borreliella kurtenbachii" "Borrelia kurtenbachii" "Adeolu et al., 2015" 3
"Borreliella lanei" "Borrelia lanei" "Gupta, 2020" 3
"Borreliella mayonii" "Borrelia mayonii" "Gupta, 2020" 3
"Borreliella sinica" "Borrelia sinica" "Adeolu et al., 2015" 3
"Borreliella spielmanii" "Borrelia spielmanii" "Adeolu et al., 2015" 3
"Borreliella valaisiana" "Borrelia valaisiana" "Adeolu et al., 2018" 3
"Borreliella yangtzensis" "Borrelia yangtzensis" "Gupta, 2020" 3
"Borreliella bavariensis" "Borrelia garinii bavariensis" "Adeolu et al., 2015" 2
"Borreliella bissettiae" "Borrelia bissettiae" "Gupta, 2020" 2
"Borreliella burgdorferi" "Borrelia burgdorferi" "Adeolu et al., 2015" 2
"Borreliella californiensis" "Borrelia californiensis" "Gupta, 2020" 2
"Borreliella carolinensis" "Borrelia carolinensis" "Adeolu et al., 2015" 2
"Borreliella garinii" "Borrelia garinii" "Adeolu et al., 2015" 2
"Borreliella japonica" "Borrelia japonica" "Adeolu et al., 2015" 2
"Borreliella kurtenbachii" "Borrelia kurtenbachii" "Adeolu et al., 2015" 2
"Borreliella lanei" "Borrelia lanei" "Gupta, 2020" 2
"Borreliella mayonii" "Borrelia mayonii" "Gupta, 2020" 2
"Borreliella sinica" "Borrelia sinica" "Adeolu et al., 2015" 2
"Borreliella spielmanii" "Borrelia spielmanii" "Adeolu et al., 2015" 2
"Borreliella valaisiana" "Borrelia valaisiana" "Adeolu et al., 2018" 2
"Borreliella yangtzensis" "Borrelia yangtzensis" "Gupta, 2020" 2
"Botryonipha aurantiaca" "Nectria aurantiaca" "Kuntze, 1891" 2
"Botryonipha flavipes" "Trichoderma flavipes" "Kuntze, 1891" 2
"Botryopyle setosa" "Amphimelissa setosa" "Cleve, 1899" 3
@@ -1857,9 +1857,9 @@
"Buliminoides curta" "Seiglieina curta" "Seiglie, 1965" 3
"Buliminoides laevigata" "Fredsmithia laevigata" "Seiglie, 1964" 3
"Buliminoides milletti" "Floresina milletti" "Cushman, 1933" 3
"Buliminus mantongensis" "Giardia mantongensis" "Kobelt, 1899" 3
"Buliminus pharangensis" "Giardia pharangensis" "Dautzenberg et al., 1905" 3
"Bulimus siamensis" "Giardia siamensis" "Redfield, 1853" 3
"Buliminus mantongensis" "Giardia mantongensis" "Kobelt, 1899" 2
"Buliminus pharangensis" "Giardia pharangensis" "Dautzenberg et al., 1905" 2
"Bulimus siamensis" "Giardia siamensis" "Redfield, 1853" 2
"Bulla ovum" "Ovum ovum" "Linnaeus, 1758" 3
"Bullera aurantiaca" "Dioszegia aurantiaca" "Johri et al., 1984" 3
"Bullera begoniae" "Bulleribasidium begoniae" "Nakase et al., 2004" 3
@@ -2009,7 +2009,7 @@
"Caliciopsis calicioides" "Exophiala calicioides" "Fitzp, 1920" 2
"Calidifontibacillus azotoformans" "Schinkia azotoformans" "Adiguzel et al., 2020" 2
"Calidifontibacillus oryziterrae" "Schinkia oryziterrae" "Adiguzel et al., 2020" 2
"Calliphora bicolor" "Lucilia bicolor" "Macquart, 1843" 3
"Calliphora bicolor" "Lucilia bicolor" "Macquart, 1843" 2
"Calomyxa longifila" "Minakatella longifila" "LGKrieglst, 1990" 3
"Calonectria calami" "Nectria calami" "Henn et al., 1900" 2
"Calonectria citrinoaurantia" "Nectria citrinoaurantia" "Sacc, 1883" 2
@@ -2302,7 +2302,7 @@
"Cavostelium bisporum" "Echinostelium bisporum" "LSOlive et al., 1966" 3
"Celeribacter manganoxidans" "Pacificitalea manganoxidans" "Wang et al., 2015" 2
"Cellanthus biperforatus" "Elphidium biperforatus" "Whittaker et al., 1979" 3
"Cellia pretoriensis" "Anopheles pretoriensis" "Gough, 1910" 3
"Cellia pretoriensis" "Anopheles pretoriensis" "Gough, 1910" 2
"Cellulomonas cartae" "Cellulosimicrobium cellulans" "Stackebrandt et al., 1980" 2
"Cellulomonas cellulans" "Cellulosimicrobium cellulans" "Stackebrandt et al., 1988" 2
"Cellulomonas fermentans" "Actinotalea fermentans" "Bagnara et al., 1985" 2
@@ -2522,11 +2522,11 @@
"Chlamydonella distyla" "Wilbertella distyla" "Jankowski, 2007" 3
"Chlamydonella polonica" "Chlamydonellopsis polonica" "Foissner et al., 1981" 3
"Chlamydonella stricta" "Wilbertiella stricta" "Deroux, 1976" 3
"Chlamydophila abortus" "Chlamydia abortus" "Everett et al., 1999" 3
"Chlamydophila felis" "Chlamydia felis" "Everett et al., 1999" 3
"Chlamydophila pecorum" "Chlamydia pecorum" "Everett et al., 1999" 3
"Chlamydophila pneumoniae" "Chlamydia pneumoniae" "Everett et al., 1999" 3
"Chlamydophila psittaci" "Chlamydia psittaci" "Everett et al., 1999" 3
"Chlamydophila abortus" "Chlamydia abortus" "Everett et al., 1999" 2
"Chlamydophila felis" "Chlamydia felis" "Everett et al., 1999" 2
"Chlamydophila pecorum" "Chlamydia pecorum" "Everett et al., 1999" 2
"Chlamydophila pneumoniae" "Chlamydia pneumoniae" "Everett et al., 1999" 2
"Chlamydophila psittaci" "Chlamydia psittaci" "Everett et al., 1999" 2
"Chlamydotomus beigelii" "Geotrichum beigelii" "Trevis, 1879" 3
"Chlamydozyma pulcherrima" "Metschnikowia pulcherrima" "Wick, 1964" 3
"Chlamydozyma reukaufii" "Metschnikowia reukaufii" "Wick, 1964" 3
@@ -2599,8 +2599,8 @@
"Chrysalogonium piramidale" "Acostina piramidale" "Acosta, 1940" 3
"Chryseobacterium arothri" "Chryseobacterium hominis" "Campbell et al., 2008" 2
"Chryseobacterium greenlandense" "Chryseobacterium aquaticum greenlandense" "Loveland-Curtze et al., 2016" 2
"Chryseobacterium meningosepticum" "Elizabethkingia meningoseptica" "Vandamme et al., 1994" 3
"Chryseobacterium miricola" "Elizabethkingia miricola" "Li et al., 2004" 3
"Chryseobacterium meningosepticum" "Elizabethkingia meningoseptica" "Vandamme et al., 1994" 2
"Chryseobacterium miricola" "Elizabethkingia miricola" "Li et al., 2004" 2
"Chryseomonas" "Pseudomonas" "Holmes et al., 1987" 1
"Chryseomonas luteola" "Pseudomonas luteola" "Holmes et al., 1987" 1
"Chryseomonas polytricha" "Pseudomonas luteola" "Holmes et al., 1986" 1
@@ -3331,11 +3331,11 @@
"Cucurbitaria urceolus" "Nectria urceolus" "Kuntze, 1898" 2
"Cucurbitaria uredinicola" "Nectria uredinicola" "Kuntze, 1898" 2
"Cucurbitaria verrucosa" "Nectria verrucosa" "Kuntze, 1898" 2
"Culex auratus" "Aedes auratus" "Leicester, 1908" 3
"Culex sticticus" "Aedes sticticus" "Meigen, 1838" 3
"Culex sudanensis" "Aedes sudanensis" "Theobald, 1911" 3
"Culex sylvaticus" "Aedes sylvaticus" "Meigen, 1818" 3
"Culicada annulipes" "Aedes annulipes" "Taylor, 1914" 3
"Culex auratus" "Aedes auratus" "Leicester, 1908" 2
"Culex sticticus" "Aedes sticticus" "Meigen, 1838" 2
"Culex sudanensis" "Aedes sudanensis" "Theobald, 1911" 2
"Culex sylvaticus" "Aedes sylvaticus" "Meigen, 1818" 2
"Culicada annulipes" "Aedes annulipes" "Taylor, 1914" 2
"Cuneolina angusta" "Textulariella angusta" "Cushman, 1919" 3
"Cunninghamia infundibulifera" "Choanephora infundibulifera" "Curr, 1873" 3
"Cupravidus yeoncheonense" "Cupriavidus yeoncheonensis" "Singh et al., 2015" 2
@@ -3456,11 +3456,11 @@
"Cytophaga diffluens" "Persicobacter diffluens" "Reichenbach, 1989" 3
"Cytophaga fermentans" "Saccharicrinis fermentans" "Bachmann, 1955" 3
"Cytophaga flevensis" "Flavobacterium flevense" "Van der Meulen et al., 1974" 2
"Cytophaga heparina" "Pedobacter heparinus" "Christensen, 1980" 3
"Cytophaga heparina" "Pedobacter heparinus" "Christensen, 1980" 2
"Cytophaga johnsonae" "Flavobacterium johnsoniae" "Stanier, 1947" 2
"Cytophaga latercula" "Aquimarina latercula" "Lewin, 1969" 3
"Cytophaga lytica" "Cellulophaga lytica" "Lewin, 1969" 3
"Cytophaga marina" "Tenacibaculum maritimum" "Reichenbach, 1989" 3
"Cytophaga marina" "Tenacibaculum maritimum" "Reichenbach, 1989" 2
"Cytophaga marinoflava" "Leeuwenhoekiella marinoflava" "Reichenbach, 1989" 3
"Cytophaga pectinovora" "Flavobacterium pectinovorum" "Reichenbach, 1989" 2
"Cytophaga psychrophila" "Flavobacterium psychrophilum" "Reichenbach, 1989" 2
@@ -3514,11 +3514,11 @@
"Defluviimonas pyrenivorans" "Acidimangrovimonas pyrenivorans" "Zhang et al., 2018" 2
"Dehalospirillum" "Sulfurospirillum" "Scholz-Muramatsu et al., 2002" 2
"Dehalospirillum multivorans" "Sulfurospirillum multivorans" "Scholz-Muramatsu et al., 2002" 2
"Deinobacter" "Deinococcus" "Oyaizu et al., 1987" 3
"Deinobacter grandis" "Deinococcus grandis" "Oyaizu et al., 1987" 3
"Deinobacter" "Deinococcus" "Oyaizu et al., 1987" 2
"Deinobacter grandis" "Deinococcus grandis" "Oyaizu et al., 1987" 2
"Deinococcus erythromyxa" "Kocuria rosea" "Brooks et al., 1981" 2
"Deinococcus mumbaiensis" "Deinococcus ficus" "Shashidhar et al., 2006" 3
"Deinococcus xibeiensis" "Deinococcus wulumuqiensis" "Wang et al., 2010" 3
"Deinococcus mumbaiensis" "Deinococcus ficus" "Shashidhar et al., 2006" 2
"Deinococcus xibeiensis" "Deinococcus wulumuqiensis" "Wang et al., 2010" 2
"Dekkeromyces aestuarii" "Kluyveromyces aestuarii" "Kock-Krat, 1982" 3
"Dekkeromyces delphensis" "Nakaseomyces delphensis" "Novak et al., 1961" 3
"Dekkeromyces dobzhanskii" "Kluyveromyces dobzhanskii" "Santa Maria et al., 1970" 3
@@ -3745,7 +3745,7 @@
"Deuterammina williamsoni" "Lepidodeuterammina williamsoni" "Bronnimann et al., 1988" 3
"Devosia nitraria" "Devosia nitrariae" "Xu et al., 2018" 2
"Devosia subaequoris" "Devosia soli" "Lee, 2007" 2
"Dexiogonimus ciureanus" "Metagonimus ciureanus" "Witenberg, 1929" 3
"Dexiogonimus ciureanus" "Metagonimus ciureanus" "Witenberg, 1929" 2
"Dexiotricha centralis" "Dexiotrichides centralis" "Stokes, 1885" 3
"Diacanthocapsa brevithorax" "Theocapsomma brevithorax" "Dumitrica, 1970" 3
"Diachaeella bulbillosa" "Diachea bulbillosa" "Hohn, 1909" 3
@@ -3772,11 +3772,11 @@
"Diaphorobacter polyhydroxybutyrativorans" "Diaphorobacter nitroreducens" "Qiu et al., 2015" 2
"Diatoma anceps" "Meridion anceps" "Kirchn" 3
"Diatoma hyalina" "Fragilaria hyalina" "Kutzing" 3
"Dibothriocephalus archeri" "Diphyllobothrium archeri" "Leiper et al., 1914" 3
"Dibothriocephalus hians" "Diphyllobothrium hians" "Luhe, 1899" 3
"Dibothriocephalus lashleyi" "Diphyllobothrium lashleyi" "Leiper et al., 1914" 3
"Dibothriocephalus pygoscelis" "Diphyllobothrium pygoscelis" "Rennie et al., 1912" 3
"Dibothriocephalus schistochilus" "Diphyllobothrium schistochilus" "Germanos, 1895" 3
"Dibothriocephalus archeri" "Diphyllobothrium archeri" "Leiper et al., 1914" 2
"Dibothriocephalus hians" "Diphyllobothrium hians" "Luhe, 1899" 2
"Dibothriocephalus lashleyi" "Diphyllobothrium lashleyi" "Leiper et al., 1914" 2
"Dibothriocephalus pygoscelis" "Diphyllobothrium pygoscelis" "Rennie et al., 1912" 2
"Dibothriocephalus schistochilus" "Diphyllobothrium schistochilus" "Germanos, 1895" 2
"Dicaeoma brassicae" "Alternaria brassicae" "Kuntze, 1898" 2
"Dichotomomyces cejpii" "Aspergillus cejpii" "Scott, 1970" 2
"Dickeya dieffenbachiae" "Dickeya dadantii dieffenbachiae" "Samson et al., 2005" 1
@@ -3938,7 +3938,7 @@
"Diplodina pedicularis" "Leptosphaeria pedicularis" "Lind, 1924" 2
"Diplodinium lunula" "Gymnodinium lunula" "Klebs, 1912" 3
"Diplodinium uncinata" "Blepharocorys uncinata" "Fiorentini, 1890" 3
"Diplogonoporus balaenopterae" "Diphyllobothrium balaenopterae" "Lonnberg, 1892" 3
"Diplogonoporus balaenopterae" "Diphyllobothrium balaenopterae" "Lonnberg, 1892" 2
"Diplophrys stercorea" "Sorodiplophrys stercorea" "Cienk, 1876" 3
"Diplophysa saprolegniae" "Olpidiopsis saprolegniae" "Schrot, 1886" 3
"Diploplenodomus piskorzii" "Phoma piskorzii" "Petr, 1923" 2
@@ -4105,7 +4105,7 @@
"Drechslera spicifera" "Curvularia spicifera" "Arx, 1975" 2
"Drechslera subpapendorfii" "Curvularia subpapendorfii" "Mouch, 1975" 2
"Drechslera tripogonis" "Curvularia tripogonis" "Patil et al., 1972" 2
"Drepanidotaenia dusmeti" "Hymenolepis dusmeti" "Lopez-Neyra, 1942" 3
"Drepanidotaenia dusmeti" "Hymenolepis dusmeti" "Lopez-Neyra, 1942" 2
"Drepanomonas simulans" "Microthorax simulans" "Kahl, 1926" 3
"Drulanta edenshawi" "Parahsuum edenshawi" "Carter, 1988" 3
"Drulanta mostleri" "Parahsuum mostleri" "Yeh, 1987" 3
@@ -4174,8 +4174,8 @@
"Eidamia viridescens" "Trichoderma viridescens" "Horne et al., 1923" 2
"Eilohedra weddellensis" "Alabaminella weddellensis" "Earland, 1936" 3
"Electothigma acuminatus" "Metopus acuminatus" "Jankowski, 1967" 3
"Elizabethkingia anophelis endophytica" "Elizabethkingia anophelis" "Garcia-Lopez et al., 2020" 3
"Elizabethkingia endophytica" "Elizabethkingia anophelis" "Kampfer et al., 2015" 3
"Elizabethkingia anophelis endophytica" "Elizabethkingia anophelis" "Garcia-Lopez et al., 2020" 2
"Elizabethkingia endophytica" "Elizabethkingia anophelis" "Kampfer et al., 2015" 2
"Elkelangia" "Novosphingopyxis" "Hordt et al., 2020" 2
"Elkelangia baekryungensis" "Novosphingopyxis baekryungensis" "Hordt et al., 2020" 2
"Ellipsolagena bidens" "Parafissurina bidens" "Cushman, 1930" 3
@@ -4255,7 +4255,7 @@
"Emericella spectabilis" "Aspergillus spectabilis" "Chr, 1978" 2
"Emericella unguis" "Aspergillus unguis" "Malloch et al., 1972" 2
"Emmonsia crescens" "Ajellomyces crescens" "Emmons et al., 1960" 3
"Empedobacter falsenii" "Wautersiella falsenii" "Zhang et al., 2014" 3
"Empedobacter falsenii" "Wautersiella falsenii" "Zhang et al., 2014" 2
"Enantiocristellaria navicula" "Saracenaria navicula" "DOrbigny, 1840" 3
"Encephalitozoon cuniculi" "Nosema cuniculi" "Levaditi et al., 1923" 3
"Encephalitozoon ixodis" "Unikaryon ixodis" "Weiser et al., 1975" 3
@@ -4341,7 +4341,7 @@
"Enteridium splendens" "Reticularia splendens" "TMacbr, 1899" 3
"Enterobacter aerogenes" "Klebsiella aerogenes" "Hormaeche et al., 1960" 1
"Enterobacter agglomerans" "Pantoea agglomerans" "Ewing et al., 1972" 1
"Enterobacter amnigenus" "Lelliottia amnigena" "Izard et al., 1981" 1
"Enterobacter amnigenus" "Lelliottia amnigena" "Izard et al., 1981" 2
"Enterobacter arachidis" "Kosakonia arachidis" "Madhaiyan et al., 2010" 1
"Enterobacter cowanii" "Kosakonia cowanii" "Inoue et al., 2001" 1
"Enterobacter dissolvens" "Enterobacter cloacae dissolvens" "Brenner et al., 1988" 1
@@ -4352,7 +4352,7 @@
"Enterobacter massiliensis" "Metakosakonia massiliensis" "Lagier et al., 2014"
"Enterobacter massiliensis" "Phytobacter massiliensis" "Lagier et al., 2014" 1
"Enterobacter muelleri" "Enterobacter asburiae" "Kampfer et al., 2015" 1
"Enterobacter nimipressuralis" "Lelliottia nimipressuralis" "Brenner et al., 1988" 1
"Enterobacter nimipressuralis" "Lelliottia nimipressuralis" "Brenner et al., 1988" 2
"Enterobacter oligotrophica" "Enterobacter oligotrophicus" "Akita et al., 2020" 1
"Enterobacter oryzae" "Kosakonia oryzae" "Peng et al., 2009" 1
"Enterobacter oryzendophyticus" "Kosakonia oryzendophytica" "Hardoim et al., 2015" 1
@@ -4527,7 +4527,7 @@
"Erwinia herbicola" "Pantoea agglomerans" "Dye, 1964" 1
"Erwinia milletiae" "Pantoea agglomerans" "Magrou, 1937" 1
"Erwinia nigrifluens" "Brenneria nigrifluens" "Wilson et al., 1957" 1
"Erwinia nimipressuralis" "Lelliottia nimipressuralis" "Dye, 1969" 1
"Erwinia nimipressuralis" "Lelliottia nimipressuralis" "Dye, 1969" 2
"Erwinia paradisiaca" "Dickeya paradisiaca" "Fernandez-Borrero et al., 1970" 1
"Erwinia persicinus" "Erwinia persicina" "Hao et al., 1990" 1
"Erwinia quercina" "Lonsdalea quercina" "Hildebrand et al., 1967" 1
@@ -4844,33 +4844,33 @@
"Flaviramulus ichthyoenteri" "Wocania ichthyoenteri" "Zhang et al., 2013" 3
"Flavirhabdus" "Lacinutrix" "Shakeela et al., 2015" 3
"Flavirhabdus iliipiscaria" "Lacinutrix iliipiscaria" "Shakeela et al., 2015" 3
"Flavobacterium anatoliense" "Myroides anatoliensis" "Kacagan et al., 2013" 3
"Flavobacterium anatoliense" "Myroides anatoliensis" "Kacagan et al., 2013" 2
"Flavobacterium balustinum" "Chryseobacterium balustinum" "Harrison, 1929" 2
"Flavobacterium bomensis" "Flavobacterium bomense" "Liu et al., 2019" 2
"Flavobacterium branchiophila" "Flavobacterium branchiophilum" "Wakabayashi et al., 1989" 2
"Flavobacterium breve" "Empedobacter brevis" "Holmes et al., 1982" 3
"Flavobacterium breve" "Empedobacter brevis" "Holmes et al., 1982" 2
"Flavobacterium capsulatum" "Novosphingobium capsulatum" "Leifson, 1962" 2
"Flavobacterium ceti" "Myroides ceti" "Vela et al., 2013" 3
"Flavobacterium cloacae" "Myroides cloacae" "Liu et al., 2017" 3
"Flavobacterium ceti" "Myroides ceti" "Vela et al., 2013" 2
"Flavobacterium cloacae" "Myroides cloacae" "Liu et al., 2017" 2
"Flavobacterium daemonensis" "Flavobacterium daemonense" "Ngo et al., 2015" 2
"Flavobacterium esteraromaticum" "Microbacterium esteraromaticum" "Bergey et al., 1930" 2
"Flavobacterium ferrugineum" "Terrimonas ferruginea" "Sickles et al., 1934" 3
"Flavobacterium ferrugineum" "Terrimonas ferruginea" "Sickles et al., 1934" 2
"Flavobacterium gleum" "Chryseobacterium gleum" "Holmes et al., 1984" 2
"Flavobacterium gondwanense" "Psychroflexus gondwanensis" "Dobson et al., 1993" 3
"Flavobacterium halmephilium" "Halomonas halmophila" "Elazari-Volcani, 1940" 1
"Flavobacterium halmophilum" "Halomonas halmophila" "Corrig Elazari-Volcani, 1940" 1
"Flavobacterium heparinum" "Pedobacter heparinus" "Payza et al., 1956" 3
"Flavobacterium heparinum" "Pedobacter heparinus" "Payza et al., 1956" 2
"Flavobacterium indologenes" "Chryseobacterium indologenes" "Yabuuchi et al., 1983" 2
"Flavobacterium indoltheticum" "Chryseobacterium indoltheticum" "Campbell et al., 1951" 2
"Flavobacterium jejuensis" "Flavobacterium jejuense" "Park et al., 2016" 2
"Flavobacterium johnsonae" "Flavobacterium johnsoniae" "Bernardet et al., 1996" 2
"Flavobacterium kyungheensis" "Flavobacterium kyungheense" "Son et al., 2014" 2
"Flavobacterium marinotypicum" "Microbacterium maritypicum" "ZoBell et al., 1944" 2
"Flavobacterium marinum" "Myroides aquimaris" "Song et al., 2013" 3
"Flavobacterium meningosepticum" "Elizabethkingia meningoseptica" "King, 1959" 3
"Flavobacterium mizutaii" "Sphingobacterium mizutaii" "Holmes et al., 1988" 3
"Flavobacterium multivorum" "Sphingobacterium multivorum" "Holmes et al., 1981" 3
"Flavobacterium odoratum" "Myroides odoratus" "Stutzer, 1929" 3
"Flavobacterium marinum" "Myroides aquimaris" "Song et al., 2013" 2
"Flavobacterium meningosepticum" "Elizabethkingia meningoseptica" "King, 1959" 2
"Flavobacterium mizutaii" "Sphingobacterium mizutaii" "Holmes et al., 1988" 2
"Flavobacterium multivorum" "Sphingobacterium multivorum" "Holmes et al., 1981" 2
"Flavobacterium odoratum" "Myroides odoratus" "Stutzer, 1929" 2
"Flavobacterium okeanokoites" "Planomicrobium okeanokoites" "ZoBell et al., 1944"
"Flavobacterium okeanokoites" "Planococcus okeanokoites" "ZoBell et al., 1944" 2
"Flavobacterium qiangtangensis" "Flavobacterium qiangtangense" "Huang et al., 2015" 2
@@ -4878,12 +4878,12 @@
"Flavobacterium salegens" "Salegentibacter salegens" "Dobson et al., 1993" 3
"Flavobacterium scophthalmum" "Chryseobacterium scophthalmum" "Mudarris et al., 1994" 2
"Flavobacterium spartansii" "Flavobacterium tructae" "Loch et al., 2019" 2
"Flavobacterium spiritivorum" "Sphingobacterium spiritivorum" "Holmes et al., 1982" 3
"Flavobacterium spiritivorum" "Sphingobacterium spiritivorum" "Holmes et al., 1982" 2
"Flavobacterium tangerina" "Flavobacterium tangerinum" "Li et al., 2020" 2
"Flavobacterium thalpophilum" "Sphingobacterium thalpophilum" "Holmes et al., 1983" 3
"Flavobacterium thalpophilum" "Sphingobacterium thalpophilum" "Holmes et al., 1983" 2
"Flavobacterium uliginosum" "Zobellia uliginosa" "ZoBell et al., 1944" 3
"Flavobacterium viscosus" "Flavobacterium viscosum" "Li et al., 2020" 2
"Flavobacterium yabuuchiae" "Sphingobacterium spiritivorum" "Holmes et al., 1988" 3
"Flavobacterium yabuuchiae" "Sphingobacterium spiritivorum" "Holmes et al., 1988" 2
"Flavobacterium zhairuonensis" "Flavobacterium zhairuonense" "Debnath et al., 2020" 2
"Flectobacillus glomeratus" "Polaribacter glomeratus" "McGuire et al., 1988" 3
"Flectobacillus marinus" "Cyclobacterium marinum" "Borrall et al., 1978" 3
@@ -4895,8 +4895,8 @@
"Flexibacter filiformis" "Chitinophaga filiformis" "Reichenbach, 1989" 3
"Flexibacter japonensis" "Chitinophaga japonensis" "Fujita et al., 1997" 3
"Flexibacter litoralis" "Bernardetia litoralis" "Lewin, 1969" 3
"Flexibacter maritimus" "Tenacibaculum maritimum" "Wakabayashi et al., 1989" 3
"Flexibacter ovolyticus" "Tenacibaculum ovolyticum" "Hansen et al., 1992" 3
"Flexibacter maritimus" "Tenacibaculum maritimum" "Wakabayashi et al., 1989" 2
"Flexibacter ovolyticus" "Tenacibaculum ovolyticum" "Hansen et al., 1992" 2
"Flexibacter polymorphus" "Garritya polymorpha" "Lewin, 1974" 3
"Flexibacter psychrophilus" "Flavobacterium psychrophilum" "Bernardet et al., 1989" 2
"Flexibacter roseolus" "Hugenholtzia roseola" "Lewin et al., 2016" 3
@@ -5338,7 +5338,7 @@
"Gordonia rubropertinctus" "Gordonia rubripertincta" "Stackebrandt et al., 1989" 2
"Gordonibacter faecihominis" "Gordonibacter urolithinfaciens" "Jin et al., 2015" 2
"Gottfriedia acidiceler" "Gottfriedia acidiceleris" "Gupta et al., 2020" 2
"Grabhamia australis" "Aedes australis" "Strickland, 1911" 3
"Grabhamia australis" "Aedes australis" "Strickland, 1911" 2
"Grahamella" "Bartonella" "Ristic et al., 1984" 2
"Grahamella peromysci" "Bartonella peromysci" "Ristic et al., 1984" 2
"Grahamella talpae" "Bartonella talpae" "Ristic et al., 1984" 2
@@ -5486,20 +5486,20 @@
"Haloarcobacter ebronensis" "Halarcobacter ebronensis" "Perez-Cataluna et al., 2019"
"Haloarcobacter ebronensis" "Arcobacter ebronensis" "Perez-Cataluna et al., 2019" 2
"Haloarcula mukohataei" "Halomicrobium mukohataei" "Ihara et al., 1997" 3
"Halobacterium cutirubrum" "Halobacterium salinarum" "Elazari-Volcani, 1957" 3
"Halobacterium cutirubrum" "Halobacterium salinarum" "Elazari-Volcani, 1957" 2
"Halobacterium denitrificans" "Haloferax denitrificans" "Tomlinson et al., 1986" 3
"Halobacterium distributum" "Halorubrum distributum" "Zvyagintseva et al., 1989" 3
"Halobacterium distributus" "Halorubrum distributum" "Zvyagintseva et al., 1989" 3
"Halobacterium halobium" "Halobacterium salinarum" "Elazari-Volcani, 1957" 3
"Halobacterium halobium" "Halobacterium salinarum" "Elazari-Volcani, 1957" 2
"Halobacterium lacusprofundi" "Halorubrum lacusprofundi" "Franzmann et al., 1989" 3
"Halobacterium mediterranei" "Haloferax mediterranei" "Rodriguez-Valera et al., 1983" 3
"Halobacterium pharaonis" "Natronomonas pharaonis" "Soliman et al., 1983" 3
"Halobacterium piscisalsi" "Halobacterium salinarum" "Yachai et al., 2008" 3
"Halobacterium piscisalsi" "Halobacterium salinarum" "Yachai et al., 2008" 2
"Halobacterium saccharovorum" "Halorubrum saccharovorum" "Tomlinson et al., 1977" 3
"Halobacterium salinarium" "Halobacterium salinarum" "Elazari-Volcani, 1957" 3
"Halobacterium salinarium" "Halobacterium salinarum" "Elazari-Volcani, 1957" 2
"Halobacterium sodomense" "Halorubrum sodomense" "Oren, 1983" 3
"Halobacterium trapanicum" "Halorubrum trapanicum" "Elazari-Volcani, 1957" 3
"Halobacterium vallismortis" "Haloarcula vallismortis" "Gonzalez et al., 1979" 3
"Halobacterium vallismortis" "Haloarcula vallismortis" "Gonzalez et al., 1979" 2
"Halobacterium volcanii" "Haloferax volcanii" "Mullakhanbhai et al., 1975" 3
"Halobacteroides acetoethylicus" "Halanaerobium acetethylicum" "Rengpipat et al., 1989" 2
"Halobacteroides lacunaris" "Halanaerobacter lacunarum" "Zhilina et al., 1992" 2
@@ -5780,7 +5780,7 @@
"Hendersonia pinicola" "Hendersonula pinicola" "Trotter, 1972" 2
"Hendersonia symploci" "Hendersonula symploci" "Berk et al., 1873" 2
"Hennebertia ovalis" "Wardomyces ovalis" "Morelet, 1969" 3
"Hepatiarius longissimus" "Opisthorchis longissimus" "Feizullaev, 1961" 3
"Hepatiarius longissimus" "Opisthorchis longissimus" "Feizullaev, 1961" 2
"Heptameria acuta" "Leptosphaeria acuta" "Cooke, 1889" 2
"Heptameria albopunctata" "Leptosphaeria albopunctata" "Cooke, 1889" 2
"Heptameria artemisiae" "Leptosphaeria artemisiae" "Cooke, 1889" 2
@@ -5853,7 +5853,7 @@
"Heteroconium chaetospira" "Cladophialophora chaetospira" "Ellis, 1976" 2
"Heterolepa haidingeri" "Cibicides haidingeri" "DOrbigny, 1846" 3
"Heteropatellina frustratiformis" "Ungulatelloides frustratiformis" "McCulloch, 1977" 3
"Heterophyes yokogawai" "Metagonimus yokogawai" "Katsurada, 1912" 3
"Heterophyes yokogawai" "Metagonimus yokogawai" "Katsurada, 1912" 2
"Heterospiroloculina bikiniensis" "Inaequalina bikiniensis" "McCulloch, 1977" 3
"Heterospiroloculina culebraensis" "Inaequalina culebraensis" "McCulloch, 1977" 3
"Heterosporium algarum" "Cladosporium algarum" "Cooke et al., 1890" 2
@@ -5972,8 +5972,8 @@
"Huaishuia" "Celeribacter" "Wang et al., 2012" 2
"Huaishuia halophila" "Celeribacter halophilus" "Wang et al., 2012" 2
"Hughesiella euricoi" "Ceratocystis euricoi" "Bat et al., 1956" 3
"Hulecoeteomyia fluviatilis" "Aedes fluviatilis" "Leicester, 1908" 3
"Hulecoeteomyia milsoni" "Aedes milsoni" "Taylor, 1916" 3
"Hulecoeteomyia fluviatilis" "Aedes fluviatilis" "Leicester, 1908" 2
"Hulecoeteomyia milsoni" "Aedes milsoni" "Taylor, 1916" 2
"Humicoccus" "Nakamurella" "Yoon et al., 2007" 2
"Humicoccus flavidus" "Nakamurella flavida" "Yoon et al., 2007" 2
"Humicola minima" "Ochroconis minima" "Fassat, 1967" 2
@@ -6942,7 +6942,7 @@
"Leifsonia pindariensis" "Microterricola pindariensis" "Reddy et al., 2008" 2
"Leiotrocha serpularum" "Cyclochaeta serpularum" "Fabre-Domergue, 1888" 3
"Leisingera nanhaiensis" "Sedimentitalea nanhaiensis" "Sun et al., 2014" 2
"Lelliottia aquatilis" "Lelliottia jeotgali" "Kampfer et al., 2018" 1
"Lelliottia aquatilis" "Lelliottia jeotgali" "Kampfer et al., 2018" 2
"Lembus armatus" "Philasterides armatus" "Kahl, 1926" 3
"Lembus kenti" "Cohnilembus kenti" "Kahl, 1931" 3
"Lembus pusillus" "Pseudocohnilembus pusillus" "Quennerstedt, 1869" 3
@@ -7208,7 +7208,7 @@
"Lonsdalea quercina iberica" "Lonsdalea iberica" "Brady et al., 2012" 1
"Lonsdalea quercina populi" "Lonsdalea populi" "Toth et al., 2013" 1
"Lonsdalea quercina quercina" "Lonsdalea quercina" "Brady et al., 2012" 1
"Loossia dobrogiensis" "Metagonimus dobrogiensis" "Ciurea, 1915" 3
"Loossia dobrogiensis" "Metagonimus dobrogiensis" "Ciurea, 1915" 2
"Lophocorys neatum" "Lophocyrtis neatum" "Sanfilippo, 1990" 3
"Lophophyton gallinae" "Microsporum gallinae" "Matr et al., 1899" 3
"Loxocephalus colpidiopsis" "Dexiotricha colpidiopsis" "Kahl, 1926" 3
@@ -7490,7 +7490,7 @@
"Mesoflavibacter sabulilitoris" "Mesoflavibacter zeaxanthinifaciens sabulilitoris" "Park et al., 2014" 3
"Mesomycoplasma molaris" "Mesomycoplasma molare" "Gupta et al., 2018" 3
"Mesonia maritimus" "Mesonia maritima" "Sung et al., 2017" 3
"Mesoplasma pleciae" "Acholeplasma pleciae" "Tully et al., 1994" 3
"Mesoplasma pleciae" "Acholeplasma pleciae" "Tully et al., 1994" 2
"Metacarinina charlesensis" "Laticarinina charlesensis" "McCulloch, 1977" 3
"Metacarinina chathamensis" "Laticarinina chathamensis" "McCulloch, 1977" 3
"Metacarinina hoodensis" "Laticarinina hoodensis" "McCulloch, 1977" 3
@@ -7882,7 +7882,7 @@
"Monosporium sclerotiale" "Scedosporium sclerotiale" "Pepere, 1914" 3
"Monosporium sepedonioides" "Chrysosporium sepedonioides" "Harz, 1872" 3
"Moorella thermoautotrophica" "Moorella thermoacetica" "Collins et al., 1994" 2
"Moraxella anatipestifer" "Riemerella anatipestifer" "Bruner et al., 1954" 3
"Moraxella anatipestifer" "Riemerella anatipestifer" "Bruner et al., 1954" 2
"Moraxella phenylpyruvica" "Psychrobacter phenylpyruvicus" "Bovre et al., 1967" 1
"Moraxella urethralis" "Oligella urethralis" "Lautrop et al., 1970" 2
"Morella entamoebae" "Sphaerita entamoebae" "Perez Reyes, 1964" 3
@@ -7898,7 +7898,7 @@
"Mrazekia niphargi" "Microsporidium niphargi" "Poisson, 1924" 3
"Mrazekia piscicola" "Jirovecia piscicola" "Cepede, 1924" 3
"Mrazekia tetraspora" "Scipionospora tetraspora" "Leger et al., 1922" 3
"Mucidus africanus" "Aedes africanus" "Theobald, 1901" 3
"Mucidus africanus" "Aedes africanus" "Theobald, 1901" 2
"Mucor angarensis" "Circinella angarensis" "Schostak, 1897" 3
"Mucor arrhizus" "Rhizopus arrhizus" "Hagem, 1908" 2
"Mucor assamensis" "Hyphomucor assamensis" "Mehrotra et al., 1970" 3
@@ -7926,7 +7926,7 @@
"Muricauda antarctica" "Muricauda taeanensis" "Wu et al., 2013" 3
"Muricauda lutea" "Croceivirga lutea" "Wang et al., 2017" 3
"Muriicola lacisalsi" "Maritimibacter lacisalsi" "Wang et al., 2021" 2
"Musca azurea" "Lucilia azurea" "Doleschall, 1858" 3
"Musca azurea" "Lucilia azurea" "Doleschall, 1858" 2
"Mya nitens" "Ervilia nitens" "Montagu, 1808" 3
"Myceloblastanon albicans" "Candida albicans" "Ota, 1927" 2
"Myceloblastanon guilliermondii" "Meyerozyma guilliermondii" "Ota, 1927" 3
@@ -8221,7 +8221,7 @@
"Mycterotrix ovata" "Maryna ovata" "Gelei, 1950" 3
"Myllocercion rhodanon" "Schadelfusslerus rhodanon" "Foreman, 1968" 3
"Myrionecta rubrum" "Mesodinium rubrum" "Jankowski, 1976" 3
"Myroides xuanwuensis" "Myroides odoratimimus xuanwuensis" "Zhang et al., 2014" 3
"Myroides xuanwuensis" "Myroides odoratimimus xuanwuensis" "Zhang et al., 2014" 2
"Myxococcus coralloides" "Corallococcus coralloides" "Thaxter, 1892" 2
"Myxococcus disciformis" "Archangium disciforme" "Thaxter, 1904" 2
"Myxococcus flavescens" "Myxococcus virescens" "Yamanaka et al., 1990" 2
@@ -8231,8 +8231,8 @@
"Myxotrichum johnstonii" "Gymnoascus johnstonii" "Massee et al., 1902" 3
"Myzocytium humicola" "Myzocytiopsis humicola" "Barron et al., 1975" 3
"Myzocytium vermicola" "Myzocytiopsis vermicola" "Fisch, 1892" 3
"Myzorhynchus minutus" "Anopheles minutus" "Theobald, 1903" 3
"Myzorhynchus pallidus" "Anopheles pallidus" "Swellengrebel, 1919" 3
"Myzorhynchus minutus" "Anopheles minutus" "Theobald, 1903" 2
"Myzorhynchus pallidus" "Anopheles pallidus" "Swellengrebel, 1919" 2
"Mzabimyces" "Halopolyspora" "Saker et al., 2015" 2
"Mzabimyces algeriensis" "Halopolyspora algeriensis" "Saker et al., 2015" 2
"Naematelia aurantia" "Tremella aurantia" "Burt, 1921" 3
@@ -9265,8 +9265,8 @@
"Orcadella operculata" "Licea operculata" "Wingate, 1889" 3
"Orcadella parasitica" "Licea parasitica" "Hagelst, 1942" 3
"Orcadella pusilla" "Licea pusilla" "Hagelst, 1942" 3
"Oribaculum" "Porphyromonas" "Moore et al., 1994" 3
"Oribaculum catoniae" "Porphyromonas catoniae" "Moore et al., 1994" 3
"Oribaculum" "Porphyromonas" "Moore et al., 1994" 2
"Oribaculum catoniae" "Porphyromonas catoniae" "Moore et al., 1994" 2
"Ornatispora frondicola" "Stachybotrys frondicola" "Hyde et al., 1999" 2
"Ornatispora gamsii" "Stachybotrys gamsii" "Hyde et al., 1999" 2
"Ornatispora nepalensis" "Stachybotrys nepalensis" "Whitton et al., 2012" 2
@@ -9602,7 +9602,7 @@
"Pedobacter huanghensis" "Daejeonella huanghensis" "Qiu et al., 2014" 3
"Pedobacter luteus" "Daejeonella lutea" "Oh et al., 2013" 3
"Pedobacter oryzae" "Daejeonella oryzae" "Jeon et al., 2009" 3
"Pedobacter piscium" "Pedobacter antarcticus" "Steyn et al., 2014" 3
"Pedobacter piscium" "Pedobacter antarcticus" "Steyn et al., 2014" 2
"Pedobacter ruber" "Daejeonella rubra" "Margesin et al., 2013" 3
"Pedobacter saltans" "Pseudopedobacter saltans" "Steyn et al., 1998" 3
"Pedobacter tournemirensis" "Arcticibacter tournemirensis" "Urios et al., 2013" 3
@@ -9828,7 +9828,7 @@
"Petersenia andreei" "Sirolpidium andreei" "Sparrow, 1936" 3
"Petersenia catenophlyctidis" "Cornumyces catenophlyctidis" "Sundaram, 1968" 3
"Petersenia irregularis" "Cornumyces irregularis" "Sparrow, 1943" 3
"Petraeus vignei" "Giardia vignei" "Rochebrune, 1882" 3
"Petraeus vignei" "Giardia vignei" "Rochebrune, 1882" 2
"Petriella boulangeri" "Microascus boulangeri" "Curzi, 1930" 3
"Petriellidium boydii" "Pseudallescheria boydii" "Malloch, 1970" 2
"Petriellidium desertorum" "Scedosporium desertorum" "Arx et al., 1973" 3
@@ -9850,8 +9850,8 @@
"Phacellium geranii" "Graphium geranii" "Braun, 1993" 3
"Phacellium ligulariae" "Graphium ligulariae" "Braun, 1993" 3
"Phacellium trifolii" "Graphium trifolii" "Braun, 1993" 3
"Phaenicia azurea" "Lucilia azurea" "Robineau-Desvoidy, 1863" 3
"Phaenicia pallescens" "Lucilia pallescens" "Shannon, 1924" 3
"Phaenicia azurea" "Lucilia azurea" "Robineau-Desvoidy, 1863" 2
"Phaenicia pallescens" "Lucilia pallescens" "Shannon, 1924" 2
"Phaenicosphaera mammilla" "Hegleria mammilla" "Sheng et al., 1985" 3
"Phaeobacter aquaemixtae" "Leisingera aquaemixtae" "Park et al., 2014" 2
"Phaeobacter arcticus" "Pseudophaeobacter arcticus" "Zhang et al., 2008" 2
@@ -9895,7 +9895,7 @@
"Phloeophthora syringae" "Phytophthora syringae" "Kleb, 1906" 3
"Phloeospora trifolii" "Leptosphaeria trifolii" "Cavara, 1878" 2
"Phlyctospora persoonii" "Elaphomyces persoonii" "Corda, 1854" 3
"Phocaeicola chinchillae" "Phocaeicola sartorii" "Garcia-Lopez et al., 2020" 3
"Phocaeicola chinchillae" "Phocaeicola sartorii" "Garcia-Lopez et al., 2020" 2
"Phoma acuta" "Leptosphaeria acuta" "Fuckel, 1870" 2
"Phoma errabunda" "Leptosphaeria errabunda" "Desm, 1849" 2
"Phoma macrocapsa" "Leptosphaeria macrocapsa" "Trail, 1886" 2
@@ -10127,7 +10127,7 @@
"Plagiotricha camelus" "Trichoda camelus" "Bory, 1824" 3
"Plagiotricha sinuata" "Trichoda sinuata" "Bory, 1824" 3
"Plagiotricha succisa" "Psilotricha succisa" "Bory, 1824" 3
"Planaria punctata" "Fasciola punctata" "Muller, 1776" 3
"Planaria punctata" "Fasciola punctata" "Muller, 1776" 2
"Planctomyces brasiliensis" "Rubinisphaera brasiliensis" "Schlesner, 1990" 3
"Planctomyces limnophilus" "Planctopirus limnophila" "Hirsch et al., 1986" 3
"Planctomyces maris" "Gimesia maris" "Bauld et al., 1980" 3
@@ -10432,8 +10432,8 @@
"Porphyrobacter mercurialis" "Croceibacterium mercuriale" "Coil et al., 2016" 2
"Porphyrobacter neustonensis" "Erythrobacter neustonensis" "Fuerst et al., 2020" 2
"Porphyrobacter sanguineus" "Erythrobacter sanguineus" "Hiraishi et al., 2002" 2
"Porphyromonas cansulci" "Porphyromonas crevioricanis" "Collins et al., 1994" 3
"Porphyromonas salivosa" "Porphyromonas macacae" "Love et al., 1992" 3
"Porphyromonas cansulci" "Porphyromonas crevioricanis" "Collins et al., 1994" 2
"Porphyromonas salivosa" "Porphyromonas macacae" "Love et al., 1992" 2
"Posadasia esteriformis" "Coccidioides esteriformis" "Canton, 1898" 3
"Poseidonibacter lekithochrous" "Arcobacter lekithochrous" "Perez-Cataluna et al., 2019" 2
"Pottsiocles hannae" "Manuelophrya hannae" "Guhl, 1985" 3
@@ -10450,7 +10450,7 @@
"Prauserella flava" "Prauserella salsuginis" "Li et al., 2009" 2
"Prevotella oulora" "Prevotella oulorum" "Shah et al., 1990" 2
"Prevotella ruminicola brevis" "Prevotella brevis" "Shah et al., 1990" 2
"Prevotella tannerae" "Alloprevotella tannerae" "Moore et al., 1994" 3
"Prevotella tannerae" "Alloprevotella tannerae" "Moore et al., 1994" 2
"Prevotella zoogleoformans" "Capsularis zoogleoformans" "Shah et al., 1994" 3
"Primorskyibacter insulae" "Pseudoprimorskyibacter insulae" "Park et al., 2015" 2
"Procandida albicans" "Candida albicans" "Novak et al., 1961" 2
@@ -11111,7 +11111,7 @@
"Rectocibicidella robertsi" "Dyocibicides robertsi" "McLean, 1956" 3
"Rectoglandulina rotundata" "Pseudonodosaria rotundata" "Reuss, 1850" 3
"Recurvoides trochamminiformis" "Recurvoidatus trochamminiformis" "Saidova, 1961" 3
"Reedomyia sudanensis" "Aedes sudanensis" "Theobald, 1913" 3
"Reedomyia sudanensis" "Aedes sudanensis" "Theobald, 1913" 2
"Reichenbachia" "Reichenbachiella" "Nedashkovskaya et al., 2003" 3
"Reichenbachia agariperforans" "Reichenbachiella agariperforans" "Nedashkovskaya et al., 2003" 3
"Remaneica gonzalezi" "Remaneicella gonzalezi" "Seiglie, 1964" 3
@@ -11462,7 +11462,7 @@
"Rotalina truncatulinoides" "Globorotalia truncatulinoides" "DOrbigny, 1839" 3
"Rotamorphina minuta" "Valvulineria minuta" "Schubert, 1904" 3
"Rothia dentocariosus" "Rothia dentocariosa" "Georg et al., 1967" 2
"Roubaudiella caerulea" "Lucilia caerulea" "Seguy, 1925" 3
"Roubaudiella caerulea" "Lucilia caerulea" "Seguy, 1925" 2
"Rozella itersoniliae" "Pleotrachelus itersoniliae" "Barr et al., 1980" 3
"Rozella septigena" "Rozellopsis septigena" "Cornu, 1872" 3
"Rozella simulans" "Rozellopsis simulans" "Fisch, 1882" 3
@@ -11790,16 +11790,16 @@
"Septotrochammina gonzalezi" "Remaneicella gonzalezi" "Seiglie, 1964" 3
"Serpens" "Pseudomonas" "Hespell, 1977" 1
"Serpens flexibilis" "Pseudomonas flexibilis" "Hespell, 1977" 1
"Serpula" "Brachyspira" "Stanton et al., 1991" 3
"Serpula hyodysenteriae" "Brachyspira hyodysenteriae" "Stanton et al., 1991" 3
"Serpula innocens" "Brachyspira innocens" "Stanton et al., 1991" 3
"Serpulina" "Brachyspira" "Stanton, 1992" 3
"Serpulina alvinipulli" "Brachyspira alvinipulli" "Stanton et al., 1998" 3
"Serpulina hyodysenteriae" "Brachyspira hyodysenteriae" "Stanton et al., 1992" 3
"Serpulina innocens" "Brachyspira innocens" "Stanton et al., 1992" 3
"Serpulina intermedia" "Brachyspira intermedia" "Stanton et al., 1997" 3
"Serpulina murdochii" "Brachyspira murdochii" "Stanton et al., 1997" 3
"Serpulina pilosicoli" "Brachyspira pilosicoli" "Trott et al., 1996" 3
"Serpula" "Brachyspira" "Stanton et al., 1991" 2
"Serpula hyodysenteriae" "Brachyspira hyodysenteriae" "Stanton et al., 1991" 2
"Serpula innocens" "Brachyspira innocens" "Stanton et al., 1991" 2
"Serpulina" "Brachyspira" "Stanton, 1992" 2
"Serpulina alvinipulli" "Brachyspira alvinipulli" "Stanton et al., 1998" 2
"Serpulina hyodysenteriae" "Brachyspira hyodysenteriae" "Stanton et al., 1992" 2
"Serpulina innocens" "Brachyspira innocens" "Stanton et al., 1992" 2
"Serpulina intermedia" "Brachyspira intermedia" "Stanton et al., 1997" 2
"Serpulina murdochii" "Brachyspira murdochii" "Stanton et al., 1997" 2
"Serpulina pilosicoli" "Brachyspira pilosicoli" "Trott et al., 1996" 2
"Serratia glossinae" "Serratia fonticola" "Geiger et al., 2010" 1
"Serratia marcescens sakuensis" "Serratia marcescens" "Ajithkumar et al., 2003" 1
"Serratia marinorubra" "Serratia rubidaea" "ZoBell et al., 1944" 1
@@ -12111,12 +12111,12 @@
"Sphaerulina amicta" "Appendichordella amicta" "Kohlm, 1962" 3
"Sphaerulina tanaceti" "Leptosphaeria tanaceti" "Shoemaker, 1976" 2
"Sphinctocystis elliptica" "Cymatopleura elliptica" "Kuntze" 3
"Sphingobacterium antarcticum" "Pedobacter antarcticus" "Shivaji et al., 1992" 3
"Sphingobacterium antarcticus" "Pedobacter antarcticus" "Shivaji et al., 1992" 3
"Sphingobacterium heparinum" "Pedobacter heparinus" "Takeuchi et al., 1993" 3
"Sphingobacterium mizutae" "Sphingobacterium mizutaii" "Yabuuchi et al., 1983" 3
"Sphingobacterium pakistanensis" "Sphingobacterium pakistanense" "Ahmed et al., 2015" 3
"Sphingobacterium piscium" "Pedobacter antarcticus" "Takeuchi et al., 1993" 3
"Sphingobacterium antarcticum" "Pedobacter antarcticus" "Shivaji et al., 1992" 2
"Sphingobacterium antarcticus" "Pedobacter antarcticus" "Shivaji et al., 1992" 2
"Sphingobacterium heparinum" "Pedobacter heparinus" "Takeuchi et al., 1993" 2
"Sphingobacterium mizutae" "Sphingobacterium mizutaii" "Yabuuchi et al., 1983" 2
"Sphingobacterium pakistanensis" "Sphingobacterium pakistanense" "Ahmed et al., 2015" 2
"Sphingobacterium piscium" "Pedobacter antarcticus" "Takeuchi et al., 1993" 2
"Sphingobium algicola" "Sphingobium limneticum" "Lee et al., 2017" 2
"Sphingobium barthaii" "Sphingobium fuliginis" "Maeda et al., 2015" 2
"Sphingobium chinhatense" "Sphingobium indicum" "Dadhwal et al., 2020" 2
@@ -12415,7 +12415,7 @@
"Staurosphaera pusilla" "Stigmosphaerostylus pusilla" "Hinde, 1899" 3
"Staurosphaera sedecimporata" "Emiluvia sedecimporata" "Rust, 1885" 3
"Staurosphaera trispinosa" "Staurolonche trispinosa" "Kozur et al., 1979" 3
"Stegomyia wellmanii" "Aedes wellmanii" "Theobald, 1910" 3
"Stegomyia wellmanii" "Aedes wellmanii" "Theobald, 1910" 2
"Steinia balladynula" "Oxytricha balladynula" "Kahl, 1932" 3
"Steinia candens" "Cyrtohymena candens" "Kahl, 1932" 3
"Steinia citrina" "Cyrtohymena citrina" "Berger et al., 1987" 3
@@ -12487,7 +12487,7 @@
"Stemphylium uredinis" "Alternaria uredinis" "Thirum, 1947" 2
"Stenella gynoxidicola" "Cladosporium gynoxidicola" "Mulder, 1982" 2
"Stenopterobia delicatissima" "Surirella delicatissima" "Van Heurck, 1896" 3
"Stenoscutus africanus" "Aedes africanus" "Theobald, 1909" 3
"Stenoscutus africanus" "Aedes africanus" "Theobald, 1909" 2
"Stenothermobacter" "Nonlabens" "Lau et al., 2006" 3
"Stenothermobacter spongiae" "Nonlabens spongiae" "Lau et al., 2006" 3
"Stenotrophomonas africana" "Stenotrophomonas maltophilia" "Drancourt et al., 1997" 1
@@ -12889,7 +12889,7 @@
"Strombidium viride" "Limnostrombidium viride" "Kahl, 1932" 3
"Strombilidium tonsuratum" "Strobilidium tonsuratum" "Meunier, 1907" 3
"Strongylidium wilberti" "Hemiamphisiella wilberti" "Foissner, 1982" 3
"Strophalosia warwicki" "Capillaria warwicki" "Maxwell, 1954" 3
"Strophalosia warwicki" "Capillaria warwicki" "Maxwell, 1954" 2
"Stylocapsa catenarum" "Plicaforacapsa catenarum" "Matsuoka, 1982" 3
"Stylocapsa oblongula" "Kilinora oblongula" "Kocher, 1981" 3
"Stylocapsa spiralis" "Kilinora spiralis" "Matsuoka, 1982" 3
@@ -12986,7 +12986,7 @@
"Tachysoma siseris" "Oxytricha siseris" "Stiller, 1974" 3
"Tachysoma tricornis" "Oxytricha tricornis" "Milne, 1886" 3
"Taeniolella boppii" "Cladophialophora boppii" "Borelli, 1983" 2
"Taeniorhynchus africanus" "Aedes africanus" "Neveu-Lemaire, 1906" 3
"Taeniorhynchus africanus" "Aedes africanus" "Neveu-Lemaire, 1906" 2
"Talaromyces brevicompactus" "Hamigera brevicompactus" "Kong, 1999" 3
"Talaromyces byssochlamydoides" "Rasamsonia byssochlamydoides" "Stolk et al., 1972" 3
"Talaromyces cejpii" "Aspergillus cejpii" "Milko, 1964" 2
@@ -13539,8 +13539,8 @@
"Tremella simplex" "Phaeotremella simplex" "Jacks et al., 1940" 3
"Tremella translucens" "Sirotrema translucens" "Gordon, 1938" 3
"Treponema caldaria" "Treponema caldarium" "Abt et al., 2013" 2
"Treponema hyodysenteriae" "Brachyspira hyodysenteriae" "Harris et al., 1972" 3
"Treponema innocens" "Brachyspira innocens" "Kinyon et al., 1979" 3
"Treponema hyodysenteriae" "Brachyspira hyodysenteriae" "Harris et al., 1972" 2
"Treponema innocens" "Brachyspira innocens" "Kinyon et al., 1979" 2
"Treponema stenostrepta" "Treponema stenostreptum" "Abt et al., 2013" 2
"Tretomphalus bermudezi" "Cymbaloporetta bermudezi" "Sellier de Civrieux, 1976" 3
"Tretomphalus concinnus" "Tretomphaloides concinnus" "Brady, 1884" 3
@@ -14161,7 +14161,7 @@
"Wautersia paucula" "Cupriavidus pauculus" "Vaneechoutte et al., 2004" 2
"Wautersia respiraculi" "Cupriavidus respiraculi" "Vaneechoutte et al., 2004" 2
"Wautersia taiwanensis" "Cupriavidus taiwanensis" "Vaneechoutte et al., 2004" 2
"Weeksella zoohelcum" "Bergeyella zoohelcum" "Holmes et al., 1987" 3
"Weeksella zoohelcum" "Bergeyella zoohelcum" "Holmes et al., 1987" 2
"Weiseria spinosa" "Golbergia spinosa" "Golberg, 1971" 3
"Weissella jogaejeotgali" "Weissella thailandensis" "Lee et al., 2015" 2
"Weissella kimchii" "Weissella cibaria" "Choi et al., 2002" 2
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@@ -276,18 +276,40 @@ MOs <- MOs %>%
"Firmicutes",
"Actinobacteria",
"Sarcomastigophora")
| genus %in% c("Absidia", "Acremonium", "Actinotignum", "Alternaria", "Anaerosalibacter", "Apophysomyces",
"Arachnia", "Aspergillus", "Aureobacterium", "Aureobasidium", "Bacteroides", "Basidiobolus",
"Beauveria", "Blastocystis", "Branhamella", "Calymmatobacterium", "Candida", "Capnocytophaga",
"Catabacter", "Chaetomium", "Chryseobacterium", "Chryseomonas", "Chrysonilia", "Cladophialophora",
"Cladosporium", "Conidiobolus", "Cryptococcus", "Curvularia", "Exophiala", "Exserohilum",
"Flavobacterium", "Fonsecaea", "Fusarium", "Fusobacterium", "Hendersonula", "Hypomyces",
"Koserella", "Lelliottia", "Leptosphaeria", "Leptotrichia", "Malassezia", "Malbranchea",
"Mortierella", "Mucor", "Mycocentrospora", "Mycoplasma", "Nectria", "Ochroconis",
"Oidiodendron", "Phoma", "Piedraia", "Pithomyces", "Pityrosporum", "Prevotella", "Pseudallescheria",
"Rhizomucor", "Rhizopus", "Rhodotorula", "Scolecobasidium", "Scopulariopsis", "Scytalidium",
"Sporobolomyces", "Stachybotrys", "Stomatococcus", "Treponema", "Trichoderma", "Trichophyton",
"Trichosporon", "Tritirachium", "Ureaplasma")
| genus %in% c("Absidia", "Acholeplasma", "Acremonium", "Actinotignum", "Aedes", "Alistipes",
"Alloprevotella", "Alternaria", "Anaerosalibacter", "Ancylostoma", "Angiostrongylus",
"Anisakis", "Anopheles", "Apophysomyces", "Arachnia", "Ascaris", "Aspergillus",
"Aureobacterium", "Aureobasidium", "Bacteroides", "Balantidum", "Basidiobolus",
"Beauveria", "Bergeyella", "Bilophilia", "Blastocystis", "Borrelia", "Brachyspira",
"Branhamella", "Brochontrix", "Brugia", "Butyricimonas", "Calymmatobacterium",
"Candida", "Capillaria", "Capnocytophaga", "Catabacter", "Cdc", "Cetobacterium",
"Chaetomium", "Chilomastix", "Chlamydia", "Chlamydophila", "Chryseobacterium",
"Chryseomonas", "Chrysonilia", "Cladophialophora", "Cladosporium", "Clonorchis",
"Conidiobolus", "Contracaecum", "Cordylobia", "Cryptococcus", "Curvularia", "Deinococcus",
"Demodex", "Dermatobia", "Dicrocoelium", "Dioctophyma", "Diphyllobothrium", "Dipylidium",
"Dirofilaria", "Dracunculus", "Dysgonomonas", "Echinococcus", "Echinostoma",
"Elisabethkingia", "Elizabethkingia", "Empedobacter", "Enterobius", "Enteromonas",
"Euascomycetes", "Exophiala", "Exserohilum", "Fasciola", "Fasciolopsis", "Flavobacterium",
"Fonsecaea", "Fusarium", "Fusobacterium", "Giardia", "Gnathostoma", "Haloarcula",
"Halobacterium", "Halococcus", "Hendersonula", "Heterophyes", "Hymenolepis", "Hypomyces",
"Hysterothylacium", "Kloeckera", "Koserella", "Larva", "Lecythophora", "Leishmania",
"Lelliottia", "Leptomyxida", "Leptosphaeria", "Leptotrichia", "Loa", "Lucilia", "Lumbricus",
"Malassezia", "Malbranchea", "Mansonella", "Mesocestoides", "Metagonimus", "Metarrhizium",
"Molonomonas", "Mortierella", "Mucor", "Multiceps", "Mycocentrospora", "Mycoplasma",
"Myroides", "Nanophetus", "Nattrassia", "Necator", "Nectria", "Novospingobium", "Ochroconis",
"Odoribacter", "Oesophagostomum", "Oidiodendron", "Onchocerca", "Opisthorchis",
"Opistorchis", "Ornithobacterium", "Parabacteroides", "Paragonimus", "Paramyxovirus",
"Pediculus", "Pedobacter", "Phlebotomus", "Phocaeicola", "Phocanema", "Phoma",
"Phthirus", "Piedraia", "Pithomyces", "Pityrosporum", "Porphyromonas", "Prevotella",
"Pseudallescheria", "Pseudoterranova", "Pulex", "Retortamonas", "Rhizomucor", "Rhizopus",
"Rhodotorula", "Riemerella", "Salinococcus", "Sanguibacteroides", "Sarcophagidae", "Sarcoptes",
"Schistosoma", "Scolecobasidium", "Scopulariopsis", "Scytalidium", "Sphingobacterium",
"Spirometra", "Sporobolomyces", "Stachybotrys", "Stenotrophomononas", "Stomatococcus",
"Streptobacillus", "Strongyloides", "Syncephalastraceae", "Syngamus", "Taenia",
"Tenacibaculum", "Ternidens", "Terrimonas", "Torulopsis", "Toxocara", "Toxoplasma",
"Treponema", "Trichinella", "Trichobilharzia", "Trichoderma", "Trichomonas", "Trichophyton",
"Trichosporon", "Trichostrongylus", "Trichuris", "Tritirachium", "Trombicula", "Trypanosoma",
"Tunga", "Ureaplasma", "Victivallis", "Wautersiella", "Weeksella", "Wuchereria")
| rank %in% c("kingdom", "phylum", "class", "order", "family"))
~ 2,
TRUE ~ 3