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(v1.8.1.9012) update prevalence of some genera

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dr. M.S. (Matthijs) Berends
2022-06-03 13:28:55 +02:00
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commit b84d647cac
37 changed files with 2909 additions and 2833 deletions
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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.8.1.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.8.1.9012</span>
</span>
</div>
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</div>
<div class="section level2">
<h2 class="page-header" data-toc-text="1.8.1.9011" id="amr-1819011">
<code>AMR</code> 1.8.1.9011<a class="anchor" aria-label="anchor" href="#amr-1819011"></a></h2>
<h2 class="page-header" data-toc-text="1.8.1.9012" id="amr-1819012">
<code>AMR</code> 1.8.1.9012<a class="anchor" aria-label="anchor" href="#amr-1819012"></a></h2>
<div class="section level3">
<h3 id="last-updated-june-1-8-1-9011"><small>Last updated: 3 June 2022</small><a class="anchor" aria-label="anchor" href="#last-updated-june-1-8-1-9011"></a></h3>
<h3 id="last-updated-june-1-8-1-9012"><small>Last updated: 3 June 2022</small><a class="anchor" aria-label="anchor" href="#last-updated-june-1-8-1-9012"></a></h3>
<div class="section level4">
<h4 id="new-1-8-1-9011">New<a class="anchor" aria-label="anchor" href="#new-1-8-1-9011"></a></h4>
<h4 id="new-1-8-1-9012">New<a class="anchor" aria-label="anchor" href="#new-1-8-1-9012"></a></h4>
<ul><li>EUCAST 2022 and CLSI 2022 guidelines have been added for <code><a href="../reference/as.rsi.html">as.rsi()</a></code>. EUCAST 2022 is now the new default guideline for all MIC and disks diffusion interpretations.</li>
</ul></div>
<div class="section level4">
<h4 id="changed-1-8-1-9011">Changed<a class="anchor" aria-label="anchor" href="#changed-1-8-1-9011"></a></h4>
<h4 id="changed-1-8-1-9012">Changed<a class="anchor" aria-label="anchor" href="#changed-1-8-1-9012"></a></h4>
<ul><li>Fix for <code><a href="../reference/as.rsi.html">as.rsi()</a></code> on certain EUCAST breakpoints for MIC values</li>
<li>Removed <code><a href="https://rdrr.io/r/base/integer.html" class="external-link">as.integer()</a></code> for MIC values, since MIC are not integer values and running <code><a href="https://rdrr.io/r/base/table.html" class="external-link">table()</a></code> on MIC values consequently failed for not being able to retrieve the level position (as that’s how normally <code><a href="https://rdrr.io/r/base/integer.html" class="external-link">as.integer()</a></code> on <code>factor</code>s work)</li>
<li>