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adding mo fixes

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dr. M.S. (Matthijs) Berends
2023-01-14 19:50:25 +01:00
parent ca79068604
commit b94bc6c67b
12 changed files with 69 additions and 44 deletions
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8
R/custom_antimicrobials.R
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@@ -27,9 +27,9 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
#' Add Custom Antimicrobials to This Package
#' Add Custom Antimicrobials
#'
#' With [add_custom_antimicrobials()] you can add your own custom antimicrobial drug codes to the `AMR` package.
#' With [add_custom_antimicrobials()] you can add your own custom antimicrobial drug names and codes.
#' @param x a [data.frame] resembling the [antibiotics] data set, at least containing columns "ab" and "name"
#' @details **Important:** Due to how \R works, the [add_custom_antimicrobials()] function has to be run in every \R session - added antimicrobials are not stored between sessions and are thus lost when \R is exited.
#'
@@ -65,13 +65,13 @@
#' ```
#'
#' Use [clear_custom_antimicrobials()] to clear the previously added antimicrobials.
#' @seealso [add_custom_microorganisms()] to add custom microorganisms to this package.
#' @seealso [add_custom_microorganisms()] to add custom microorganisms.
#' @rdname add_custom_antimicrobials
#' @export
#' @examples
#' \donttest{
#'
#' # returns NA and throws a warning (which is now suppressed):
#' # returns NA and throws a warning (which is suppressed here):
#' suppressWarnings(
#' as.ab("testab")
#' )