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adding mo fixes

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dr. M.S. (Matthijs) Berends
2023-01-14 19:50:25 +01:00
parent ca79068604
commit b94bc6c67b
12 changed files with 69 additions and 44 deletions
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7
R/zzz.R
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@ -239,10 +239,3 @@ create_MO_lookup <- function() {
MO_lookup$subspecies_first <- tolower(substr(MO_lookup$subspecies, 1, 1)) # tolower for Salmonella serovars
MO_lookup
}
add_intrinsic_resistance_to_AMR_env <- function() {
# for mo_is_intrinsic_resistant() - saves a lot of time when executed on this vector
if (is.null(AMR_env$intrinsic_resistant)) {
AMR_env$intrinsic_resistant <- paste(AMR::intrinsic_resistant$mo, AMR::intrinsic_resistant$ab)
}
}