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adding mo fixes

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dr. M.S. (Matthijs) Berends
2023-01-14 19:50:25 +01:00
parent ca79068604
commit b94bc6c67b
12 changed files with 69 additions and 44 deletions
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8
man/add_custom_antimicrobials.Rd
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@ -3,7 +3,7 @@
\name{add_custom_antimicrobials}
\alias{add_custom_antimicrobials}
\alias{clear_custom_antimicrobials}
\title{Add Custom Antimicrobials to This Package}
\title{Add Custom Antimicrobials}
\usage{
add_custom_antimicrobials(x)
@ -13,7 +13,7 @@ clear_custom_antimicrobials()
\item{x}{a \link{data.frame} resembling the \link{antibiotics} data set, at least containing columns "ab" and "name"}
}
\description{
With \code{\link[=add_custom_antimicrobials]{add_custom_antimicrobials()}} you can add your own custom antimicrobial drug codes to the \code{AMR} package.
With \code{\link[=add_custom_antimicrobials]{add_custom_antimicrobials()}} you can add your own custom antimicrobial drug names and codes.
}
\details{
\strong{Important:} Due to how \R works, the \code{\link[=add_custom_antimicrobials]{add_custom_antimicrobials()}} function has to be run in every \R session - added antimicrobials are not stored between sessions and are thus lost when \R is exited.
@ -52,7 +52,7 @@ Use \code{\link[=clear_custom_antimicrobials]{clear_custom_antimicrobials()}} to
\examples{
\donttest{
# returns NA and throws a warning (which is now suppressed):
# returns NA and throws a warning (which is suppressed here):
suppressWarnings(
as.ab("testab")
)
@ -101,5 +101,5 @@ x[, betalactams()]
}
}
\seealso{
\code{\link[=add_custom_microorganisms]{add_custom_microorganisms()}} to add custom microorganisms to this package.
\code{\link[=add_custom_microorganisms]{add_custom_microorganisms()}} to add custom microorganisms.
}