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(v3.0.1.9088) add version number to intrinsic_resistant

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dr. M.S. (Matthijs) Berends
2026-09-03 12:14:25 +02:00
parent 2c33297cf6
commit bbdd3a92e2
23 changed files with 94 additions and 87 deletions
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man/clinical_breakpoints.Rd
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@@ -48,7 +48,15 @@ The default is \code{"human"}, which can also be set with the package option \co
\subsection{Imported From WHONET}{
Clinical breakpoints in this package were validated through and imported from \href{https://whonet.org}{WHONET}, a free desktop Windows application developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance. More can be read on \href{https://whonet.org}{their website}. The developers of WHONET and this \code{AMR} package have been in contact about sharing their work. We highly appreciate their great development on the WHONET software.
Some breakpoints in this package were validated through and imported from \href{https://whonet.org}{WHONET}, a free desktop Windows application developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance. More can be read on \href{https://whonet.org}{their website}. The developers of WHONET and this \code{AMR} package have been in contact about sharing their work. We highly appreciate their great development on the WHONET software.
From WHONET, imported were:
\itemize{
\item All CLSI breakpoints, including ECOFF
\item EUCAST breakpoints between 2011 and 2018
}
EUCAST breakpoints from 2019 onwards, were retrieved directly from \url{https://www.eucast.org}.
Our import and reproduction script can be found here: \url{https://github.com/msberends/AMR/blob/main/data-raw/_reproduction_scripts/reproduction_of_clinical_breakpoints.R}.
}