P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-09-11 16:58:56 +02:00
Code Releases Activity

(v3.0.1.9088) add version number to intrinsic_resistant

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2026-09-03 12:14:25 +02:00
parent 2c33297cf6
commit bbdd3a92e2
23 changed files with 94 additions and 87 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
man/plot.Rd
View File

@@ -248,7 +248,7 @@ At default, they translate the S/I/R values to an interpretative text ("Suscepti
This package contains more functions that extend the \code{ggplot2} package, to help in visualising AMR data results. All these functions are internally used by \code{\link[=ggplot_sir]{ggplot_sir()}} too.
\itemize{
\item \code{\link[=facet_sir]{facet_sir()}} creates 2d plots (at default based on S/I/R) using \code{\link[ggplot2:facet_wrap]{ggplot2::facet_wrap()}}.
\item \code{\link[=scale_y_percent]{scale_y_percent()}} transforms the y axis to a 0 to 100\% range using \code{\link[ggplot2:scale_continuous]{ggplot2::scale_y_continuous()}}.
\item \code{\link[=scale_y_percent]{scale_y_percent()}} transforms the y axis to a 0 to 100\% range using \code{\link[ggplot2:scale_y_continuous]{ggplot2::scale_y_continuous()}}.
\item \code{\link[=scale_sir_colours]{scale_sir_colours()}} allows to set colours to any aesthetic, even for \code{shape} or \code{linetype}.
\item \code{\link[=theme_sir]{theme_sir()}} is a \link[ggplot2:theme]{ggplot2 theme} with minimal distraction.
\item \code{\link[=labels_sir_count]{labels_sir_count()}} print datalabels on the bars with percentage and number of isolates, using \code{\link[ggplot2:geom_text]{ggplot2::geom_text()}}.