1
0
mirror of https://github.com/msberends/AMR.git synced 2025-08-27 17:02:12 +02:00

new Norwegian link

This commit is contained in:
2024-03-03 23:24:57 +01:00
parent f2d245b0cb
commit bc4f8515e2
26 changed files with 50 additions and 50 deletions

View File

@@ -4,7 +4,7 @@ library(tidyr)
library(AMR)
# we need J01, J02 and J04 (J03 does not exist)
url <- "https://www.whocc.no/atc_ddd_index/?code={code}&showdescription=no"
url <- "https://atcddd.fhi.no/atc_ddd_index/?code={code}&showdescription=no"
complete_vector <- character(0)
for (Jxx in c("J01", "J02", "J04")) {
site <- gsub("{code}", Jxx, url, fixed = TRUE)

View File

@@ -761,9 +761,9 @@ updated_atc <- as.list(antibiotics$atc)
get_atcs <- function(ab_name, type = "human") {
if (type == "human") {
url <- "https://www.whocc.no/atc_ddd_index/"
url <- "https://atcddd.fhi.no/atc_ddd_index/"
} else if (type == "veterinary") {
url <- "https://www.whocc.no/atcvet/atcvet_index/"
url <- "https://atcddd.fhi.no/atcvet/atcvet_index/"
} else {
stop("invalid type")
}

View File

@@ -34,7 +34,7 @@ library(rvest)
# get all data from the WHOCC website
get_atc_table <- function(atc_group) {
# give as input J0XXX, like atc_group = "J05AB"
downloaded <- read_html(paste0("https://www.whocc.no/atc_ddd_index/?code=", atc_group, "&showdescription=no"))
downloaded <- read_html(paste0("https://atcddd.fhi.no/atc_ddd_index/?code=", atc_group, "&showdescription=no"))
table_title <- downloaded %>%
html_nodes(paste0('a[href^="./?code=', atc_group, '&"]')) %>%
html_text()
@@ -62,7 +62,7 @@ get_atc_table <- function(atc_group) {
)
}
# these are the relevant groups for input: https://www.whocc.no/atc_ddd_index/?code=J05A (J05 only contains J05A)
# these are the relevant groups for input: https://atcddd.fhi.no/atc_ddd_index/?code=J05A (J05 only contains J05A)
atc_groups <- c("J05AA", "J05AB", "J05AC", "J05AD", "J05AE", "J05AF", "J05AG", "J05AH", "J05AJ", "J05AP", "J05AR", "J05AX")
# get the first